miRNA display CGI


Results 81 - 100 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 133384 0.69 0.357766
Target:  5'- uCCCuccggcGGUCGCCCGGaCCauggagggcgagacgGCCgCGCGGUCc -3'
miRNA:   3'- -GGGu-----CCGGUGGGCC-GG---------------CGG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 132364 0.68 0.404711
Target:  5'- aCCGGGCgCugCCGGCCGagacggacgagaCCGCucGCUg -3'
miRNA:   3'- gGGUCCG-GugGGCCGGCg-----------GGCGc-CGG- -5'
9186 3' -68.4 NC_002512.2 + 132012 0.73 0.184329
Target:  5'- gCCGGGgCGCUggucgucgCGGCCGCCCGCcccGGCg -3'
miRNA:   3'- gGGUCCgGUGG--------GCCGGCGGGCG---CCGg -5'
9186 3' -68.4 NC_002512.2 + 131307 0.67 0.445598
Target:  5'- ---cGGCC-UCCGGCgCGgcgccguccuccCCCGCGGCCc -3'
miRNA:   3'- ggguCCGGuGGGCCG-GC------------GGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 131117 0.69 0.327776
Target:  5'- gCCGGGCCACCuucuCGG-CGCCCGUcuucgucaacccGcGCCa -3'
miRNA:   3'- gGGUCCGGUGG----GCCgGCGGGCG------------C-CGG- -5'
9186 3' -68.4 NC_002512.2 + 131028 0.66 0.478568
Target:  5'- gCCCGGGCCGCUCcaagaGaUCGCgCaCGGCCg -3'
miRNA:   3'- -GGGUCCGGUGGGc----C-GGCGgGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 130913 0.67 0.413163
Target:  5'- gUCCGGGUCucaagcgcggucgGCCCGGuuccCCGCCCGacugcaucCGGCUc -3'
miRNA:   3'- -GGGUCCGG-------------UGGGCC----GGCGGGC--------GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 130844 0.7 0.283984
Target:  5'- --gAGGCCgacguuggaACCCGcCCGCUCGCGGCg -3'
miRNA:   3'- gggUCCGG---------UGGGCcGGCGGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 130709 0.66 0.504063
Target:  5'- aCCCAGGaCGCUCaGCCGggaCGUGGCg -3'
miRNA:   3'- -GGGUCCgGUGGGcCGGCgg-GCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 130632 0.67 0.437555
Target:  5'- gCCAgacgggguuGGCgGCCUGGCCGCgCGUGuCCc -3'
miRNA:   3'- gGGU---------CCGgUGGGCCGGCGgGCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 130531 0.66 0.512693
Target:  5'- uCCCGGGC--CCCGcGCuCG-UCGCGGUCg -3'
miRNA:   3'- -GGGUCCGguGGGC-CG-GCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 130504 0.67 0.445598
Target:  5'- gCCGGGCUGCgaGGCCGUgCGguuCGGCa -3'
miRNA:   3'- gGGUCCGGUGggCCGGCGgGC---GCCGg -5'
9186 3' -68.4 NC_002512.2 + 130502 0.66 0.495497
Target:  5'- gCCCucggaGGGCCcggcGCCCGaGCCGauCCC-CGGCa -3'
miRNA:   3'- -GGG-----UCCGG----UGGGC-CGGC--GGGcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 130411 0.78 0.086171
Target:  5'- uCgCGGGCCgGCCCGccGCCGggcCCCGCGGCCg -3'
miRNA:   3'- -GgGUCCGG-UGGGC--CGGC---GGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 130380 0.71 0.261106
Target:  5'- gCCAGGCCGCCaaccccgucUGGCaCGCCUuGCGGaUCg -3'
miRNA:   3'- gGGUCCGGUGG---------GCCG-GCGGG-CGCC-GG- -5'
9186 3' -68.4 NC_002512.2 + 130369 0.67 0.445598
Target:  5'- cCCCGGGCCuccagcuCCCucUCGaCCGCGGCa -3'
miRNA:   3'- -GGGUCCGGu------GGGccGGCgGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 129986 0.7 0.314773
Target:  5'- gCCGGGa-GCgCCGGCgGCgCCGCGuGCCc -3'
miRNA:   3'- gGGUCCggUG-GGCCGgCG-GGCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 129822 0.67 0.445598
Target:  5'- -aUAGGUCgGCCaCGGCCuCCCG-GGCCu -3'
miRNA:   3'- ggGUCCGG-UGG-GCCGGcGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 129807 0.7 0.314773
Target:  5'- cCCCuGaCCGCuCCGuCCccgGCCCGCGGCCc -3'
miRNA:   3'- -GGGuCcGGUG-GGCcGG---CGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 129558 0.7 0.27812
Target:  5'- gCCGGG-CGCUCGGguggggaaacCgCGCCCGCGGCUc -3'
miRNA:   3'- gGGUCCgGUGGGCC----------G-GCGGGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.