miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9187 3' -57.5 NC_002512.2 + 40310 0.66 0.910764
Target:  5'- ----aGCcuacauCUGUUGCGACGUCGCCGu -3'
miRNA:   3'- guugaCGac----GACGACGUUGCGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 129536 0.66 0.910764
Target:  5'- aCGAC-GCcgUGCUGCgugGcCGGCGCCcGCCa -3'
miRNA:   3'- -GUUGaCG--ACGACGa--C-GUUGCGG-CGGc -5'
9187 3' -57.5 NC_002512.2 + 88689 0.66 0.904785
Target:  5'- cCGGCUGC-GCUGCUGCAugauccgguaGCGg-GCCa -3'
miRNA:   3'- -GUUGACGaCGACGACGU----------UGCggCGGc -5'
9187 3' -57.5 NC_002512.2 + 145947 0.66 0.904785
Target:  5'- uCGAcCUGCUGC-GCgacaUGCGccggGCGCUGCUGg -3'
miRNA:   3'- -GUU-GACGACGaCG----ACGU----UGCGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 96225 0.66 0.904785
Target:  5'- gCGGCcGCgGCgGCgGCGGCGaCCGCCc -3'
miRNA:   3'- -GUUGaCGaCGaCGaCGUUGC-GGCGGc -5'
9187 3' -57.5 NC_002512.2 + 45400 0.66 0.904785
Target:  5'- gGACUGUcgcucgUGCggGCgcucgacgGCGGCGCCgGCCGc -3'
miRNA:   3'- gUUGACG------ACGa-CGa-------CGUUGCGG-CGGC- -5'
9187 3' -57.5 NC_002512.2 + 150534 0.66 0.898582
Target:  5'- -cGCgGCgGCcGCgagGguACGCCGCCGc -3'
miRNA:   3'- guUGaCGaCGaCGa--CguUGCGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 117042 0.66 0.898582
Target:  5'- gAGCUGUucggGCUGCUGCcguuCG-UGCCGg -3'
miRNA:   3'- gUUGACGa---CGACGACGuu--GCgGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 112520 0.66 0.898582
Target:  5'- gGACgaGUUGCUGUUGCAgACGgCGgCGg -3'
miRNA:   3'- gUUGa-CGACGACGACGU-UGCgGCgGC- -5'
9187 3' -57.5 NC_002512.2 + 110490 0.66 0.898582
Target:  5'- gCAGCgGCacgcgGCccUGCaGCAGgGCCGCCGc -3'
miRNA:   3'- -GUUGaCGa----CG--ACGaCGUUgCGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 25809 0.66 0.89795
Target:  5'- --uUUGUUGCguaccGCUGCAACgauauggGCCGUCGa -3'
miRNA:   3'- guuGACGACGa----CGACGUUG-------CGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 154582 0.66 0.892158
Target:  5'- aUAACgGCgaggGCgacgGCgGCAucguCGCCGCCGc -3'
miRNA:   3'- -GUUGaCGa---CGa---CGaCGUu---GCGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 51737 0.66 0.892158
Target:  5'- gAACggGCggagagGCUGCUGCGgACGCUGaCGa -3'
miRNA:   3'- gUUGa-CGa-----CGACGACGU-UGCGGCgGC- -5'
9187 3' -57.5 NC_002512.2 + 187548 0.66 0.892158
Target:  5'- aCGACaGCUGUaucuuuucuccGCUcGCGACGUCGCCa -3'
miRNA:   3'- -GUUGaCGACGa----------CGA-CGUUGCGGCGGc -5'
9187 3' -57.5 NC_002512.2 + 75908 0.66 0.885516
Target:  5'- --uCUGuUUGCcGCcGcCGGCGCCGCCGg -3'
miRNA:   3'- guuGAC-GACGaCGaC-GUUGCGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 196830 0.66 0.885516
Target:  5'- --uCUGCgacggGCUGCgGCGgauggACGCCGUCu -3'
miRNA:   3'- guuGACGa----CGACGaCGU-----UGCGGCGGc -5'
9187 3' -57.5 NC_002512.2 + 217572 0.66 0.885516
Target:  5'- gCGACgGCgaGCcgGUccgGCGGCGCCGCCu -3'
miRNA:   3'- -GUUGaCGa-CGa-CGa--CGUUGCGGCGGc -5'
9187 3' -57.5 NC_002512.2 + 122278 0.66 0.878659
Target:  5'- cCGACUcGCUGgUGCUGCuccugGUCGUCGu -3'
miRNA:   3'- -GUUGA-CGACgACGACGuug--CGGCGGC- -5'
9187 3' -57.5 NC_002512.2 + 179315 0.66 0.878659
Target:  5'- gCGGCgagGCggGCagaucCUGCAGCGCCGCgCGa -3'
miRNA:   3'- -GUUGa--CGa-CGac---GACGUUGCGGCG-GC- -5'
9187 3' -57.5 NC_002512.2 + 167035 0.66 0.878659
Target:  5'- ---aUGCUGCccUGcCUGCccauCGCCGCCu -3'
miRNA:   3'- guugACGACG--AC-GACGuu--GCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.