miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9188 3' -59.3 NC_002512.2 + 121790 0.66 0.867347
Target:  5'- cGUGCucgacCCCGGCGC-GCCGGAGc--- -3'
miRNA:   3'- cCGCGu----GGGCUGUGuCGGCCUCacaa -5'
9188 3' -59.3 NC_002512.2 + 99788 0.66 0.867347
Target:  5'- gGGCGCGCCCuuCACucGGCCGucGGGUa-- -3'
miRNA:   3'- -CCGCGUGGGcuGUG--UCGGC--CUCAcaa -5'
9188 3' -59.3 NC_002512.2 + 33398 0.66 0.867347
Target:  5'- cGGCGUccGCCagccaGGCGuagUAGCCGGAGaUGUc -3'
miRNA:   3'- -CCGCG--UGGg----CUGU---GUCGGCCUC-ACAa -5'
9188 3' -59.3 NC_002512.2 + 10359 0.66 0.860118
Target:  5'- -cCGCGgCCGGCcCGGCCGGGGa--- -3'
miRNA:   3'- ccGCGUgGGCUGuGUCGGCCUCacaa -5'
9188 3' -59.3 NC_002512.2 + 13813 0.66 0.860118
Target:  5'- uGCgGC-CCCGACGCGGUCGGcggcucgaucuuGGUGa- -3'
miRNA:   3'- cCG-CGuGGGCUGUGUCGGCC------------UCACaa -5'
9188 3' -59.3 NC_002512.2 + 116988 0.66 0.860118
Target:  5'- gGGCGCcgGCCuCGcCGCGGCCGGGc---- -3'
miRNA:   3'- -CCGCG--UGG-GCuGUGUCGGCCUcacaa -5'
9188 3' -59.3 NC_002512.2 + 28676 0.66 0.860118
Target:  5'- aGGUGguCCCcgu-CGGCCGGGGUGc- -3'
miRNA:   3'- -CCGCguGGGcuguGUCGGCCUCACaa -5'
9188 3' -59.3 NC_002512.2 + 135112 0.66 0.860118
Target:  5'- cGGCGuCGCCCGAgACGucGCgCGGGGa--- -3'
miRNA:   3'- -CCGC-GUGGGCUgUGU--CG-GCCUCacaa -5'
9188 3' -59.3 NC_002512.2 + 134905 0.66 0.860118
Target:  5'- cGCGCACCUGuACGCGGaCCGGcgcGGcGUc -3'
miRNA:   3'- cCGCGUGGGC-UGUGUC-GGCC---UCaCAa -5'
9188 3' -59.3 NC_002512.2 + 70270 0.66 0.852702
Target:  5'- gGGCGCuggACCgGACGCAG--GGGGUGg- -3'
miRNA:   3'- -CCGCG---UGGgCUGUGUCggCCUCACaa -5'
9188 3' -59.3 NC_002512.2 + 132371 0.66 0.852702
Target:  5'- cGGCGCuACCgGGCGCuGCCGGc----- -3'
miRNA:   3'- -CCGCG-UGGgCUGUGuCGGCCucacaa -5'
9188 3' -59.3 NC_002512.2 + 135345 0.66 0.852702
Target:  5'- gGGCGCGCaCGACGCGGagacgCGGGGg--- -3'
miRNA:   3'- -CCGCGUGgGCUGUGUCg----GCCUCacaa -5'
9188 3' -59.3 NC_002512.2 + 113048 0.66 0.852702
Target:  5'- aGGUGCgggccgcccuggACCCGGCACAGCggcaCGGGGc--- -3'
miRNA:   3'- -CCGCG------------UGGGCUGUGUCG----GCCUCacaa -5'
9188 3' -59.3 NC_002512.2 + 100262 0.66 0.845102
Target:  5'- aGGcCGCACgCGACGCGGCCGa------ -3'
miRNA:   3'- -CC-GCGUGgGCUGUGUCGGCcucacaa -5'
9188 3' -59.3 NC_002512.2 + 8424 0.66 0.845102
Target:  5'- cGCGCACCgCGGC-CGGUCGGAc---- -3'
miRNA:   3'- cCGCGUGG-GCUGuGUCGGCCUcacaa -5'
9188 3' -59.3 NC_002512.2 + 8180 0.66 0.845102
Target:  5'- cGGCguaGCACCCGAgGCcgagcgucGCCGGgcgGGUGUc -3'
miRNA:   3'- -CCG---CGUGGGCUgUGu-------CGGCC---UCACAa -5'
9188 3' -59.3 NC_002512.2 + 84358 0.66 0.845102
Target:  5'- gGGaUGCuccgGCCCGACGCgcagAGCCGGAGc--- -3'
miRNA:   3'- -CC-GCG----UGGGCUGUG----UCGGCCUCacaa -5'
9188 3' -59.3 NC_002512.2 + 39690 0.66 0.845102
Target:  5'- cGCGC-CgCCGACcuucuGCAGCCGGGGcGa- -3'
miRNA:   3'- cCGCGuG-GGCUG-----UGUCGGCCUCaCaa -5'
9188 3' -59.3 NC_002512.2 + 74222 0.66 0.845102
Target:  5'- cGCGguCCCGACGCggggcgaacGGCCGGAc---- -3'
miRNA:   3'- cCGCguGGGCUGUG---------UCGGCCUcacaa -5'
9188 3' -59.3 NC_002512.2 + 44107 0.66 0.837326
Target:  5'- cGuCGCGCUCGgcaACACGGCCGucGUGUa -3'
miRNA:   3'- cC-GCGUGGGC---UGUGUCGGCcuCACAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.