miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9188 5' -55.9 NC_002512.2 + 9172 0.66 0.966803
Target:  5'- -cGACccgGCCGAGGCCGCccuggccaggaGgGUCGaGUGCc -3'
miRNA:   3'- uaUUG---UGGCUCUGGUG-----------CgCAGC-CGCG- -5'
9188 5' -55.9 NC_002512.2 + 226185 0.66 0.966803
Target:  5'- -gGACAgaGAcGGCCGCGCcGUUaGCGCg -3'
miRNA:   3'- uaUUGUggCU-CUGGUGCG-CAGcCGCG- -5'
9188 5' -55.9 NC_002512.2 + 56562 0.66 0.966803
Target:  5'- -cGGgACCGaAGACCcCGCaggCGGCGUu -3'
miRNA:   3'- uaUUgUGGC-UCUGGuGCGca-GCCGCG- -5'
9188 5' -55.9 NC_002512.2 + 101869 0.66 0.966803
Target:  5'- -cGACGCCGGGGCgGgucuguucUGCcUCGGgCGCg -3'
miRNA:   3'- uaUUGUGGCUCUGgU--------GCGcAGCC-GCG- -5'
9188 5' -55.9 NC_002512.2 + 134120 0.66 0.966803
Target:  5'- -gGACGCCcccGuCCAgGCGgccgucgCGGCGCg -3'
miRNA:   3'- uaUUGUGGcu-CuGGUgCGCa------GCCGCG- -5'
9188 5' -55.9 NC_002512.2 + 37473 0.66 0.966803
Target:  5'- ------aCGAGACCggACGCGUCGGaaggacgguaaaCGCg -3'
miRNA:   3'- uauugugGCUCUGG--UGCGCAGCC------------GCG- -5'
9188 5' -55.9 NC_002512.2 + 136581 0.66 0.966803
Target:  5'- -cAGC-CCG-GugCGCGgGUUGGaCGCg -3'
miRNA:   3'- uaUUGuGGCuCugGUGCgCAGCC-GCG- -5'
9188 5' -55.9 NC_002512.2 + 18140 0.66 0.966803
Target:  5'- -cAGCGCCcGGGCCGCGuCG-CGG-GCc -3'
miRNA:   3'- uaUUGUGGcUCUGGUGC-GCaGCCgCG- -5'
9188 5' -55.9 NC_002512.2 + 5083 0.66 0.966803
Target:  5'- uUGGuCGUCGucGCCG-GCGUCGGCGCg -3'
miRNA:   3'- uAUU-GUGGCucUGGUgCGCAGCCGCG- -5'
9188 5' -55.9 NC_002512.2 + 18848 0.66 0.966803
Target:  5'- --uGCGCCGAGugCGgcaUGCGgcggucCGaGCGCa -3'
miRNA:   3'- uauUGUGGCUCugGU---GCGCa-----GC-CGCG- -5'
9188 5' -55.9 NC_002512.2 + 4347 0.66 0.966803
Target:  5'- --uGCGCCGgccGGGCCGCGgG-CGGC-Cg -3'
miRNA:   3'- uauUGUGGC---UCUGGUGCgCaGCCGcG- -5'
9188 5' -55.9 NC_002512.2 + 125142 0.66 0.966803
Target:  5'- gGUAGC-CCGGGuuCCgcacggGCGCGUCGagccccGCGCa -3'
miRNA:   3'- -UAUUGuGGCUCu-GG------UGCGCAGC------CGCG- -5'
9188 5' -55.9 NC_002512.2 + 123142 0.66 0.966803
Target:  5'- -gGACGCCcGGGCCGgG-GUCGGC-Cg -3'
miRNA:   3'- uaUUGUGGcUCUGGUgCgCAGCCGcG- -5'
9188 5' -55.9 NC_002512.2 + 105138 0.66 0.966803
Target:  5'- -gGAC-CCGGccccgUCGCGcCGUCGGCGCc -3'
miRNA:   3'- uaUUGuGGCUcu---GGUGC-GCAGCCGCG- -5'
9188 5' -55.9 NC_002512.2 + 65701 0.66 0.966803
Target:  5'- ---uCGCCGGGAagcCGC-UCGGCGCc -3'
miRNA:   3'- uauuGUGGCUCUgguGCGcAGCCGCG- -5'
9188 5' -55.9 NC_002512.2 + 51456 0.66 0.966803
Target:  5'- -cGACAcguCCGAGGcCCGCaGCG-CGGcCGCc -3'
miRNA:   3'- uaUUGU---GGCUCU-GGUG-CGCaGCC-GCG- -5'
9188 5' -55.9 NC_002512.2 + 6251 0.66 0.966803
Target:  5'- -gGAgGCCGAGGaggaggaGCGggagCGGCGCg -3'
miRNA:   3'- uaUUgUGGCUCUggug---CGCa---GCCGCG- -5'
9188 5' -55.9 NC_002512.2 + 38284 0.66 0.966497
Target:  5'- -aGACGCCGAcggacucGACCGCGCGaccgaacaGGCu- -3'
miRNA:   3'- uaUUGUGGCU-------CUGGUGCGCag------CCGcg -5'
9188 5' -55.9 NC_002512.2 + 48782 0.66 0.965878
Target:  5'- -cGGCACgCGuGgaucagcuucagcaGCCGCGCGUCGucguGCGCc -3'
miRNA:   3'- uaUUGUG-GCuC--------------UGGUGCGCAGC----CGCG- -5'
9188 5' -55.9 NC_002512.2 + 67369 0.66 0.965878
Target:  5'- --uACACCGAGucguguACCAucaauUGCGUCguuacugucaccaaGGCGCg -3'
miRNA:   3'- uauUGUGGCUC------UGGU-----GCGCAG--------------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.