miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 5' -56 NC_002512.2 + 106773 0.66 0.972181
Target:  5'- uCUCGGCC-CGCggcacugGUCGgggUCGGGguCGAc -3'
miRNA:   3'- -GAGCUGGaGCGa------CAGC---AGCCUguGCU- -5'
9189 5' -56 NC_002512.2 + 123261 0.66 0.972181
Target:  5'- -aCGACCggcgcCGCaUGUCGgaGGACAUGGa -3'
miRNA:   3'- gaGCUGGa----GCG-ACAGCagCCUGUGCU- -5'
9189 5' -56 NC_002512.2 + 167173 0.66 0.971375
Target:  5'- gUCGACCgcgacgCGCUGcgCGUCaagaucguguacggGGACAcCGAc -3'
miRNA:   3'- gAGCUGGa-----GCGACa-GCAG--------------CCUGU-GCU- -5'
9189 5' -56 NC_002512.2 + 212500 0.66 0.96943
Target:  5'- -cCGACCUCggGCUGgacgCGGAcCACGAu -3'
miRNA:   3'- gaGCUGGAG--CGACagcaGCCU-GUGCU- -5'
9189 5' -56 NC_002512.2 + 222052 0.66 0.96943
Target:  5'- -gCGACaugCUCGCgg-CGUCGGAUGCGc -3'
miRNA:   3'- gaGCUG---GAGCGacaGCAGCCUGUGCu -5'
9189 5' -56 NC_002512.2 + 200340 0.66 0.96943
Target:  5'- -gCGuCCUC-CUGUCGgCGGACGgGGg -3'
miRNA:   3'- gaGCuGGAGcGACAGCaGCCUGUgCU- -5'
9189 5' -56 NC_002512.2 + 158301 0.66 0.96943
Target:  5'- -cCGGCCcccaaggcCGCgGUCGUCcGGCGCGAg -3'
miRNA:   3'- gaGCUGGa-------GCGaCAGCAGcCUGUGCU- -5'
9189 5' -56 NC_002512.2 + 72633 0.66 0.96943
Target:  5'- -aCGuCCUCGCcgGUCGaCGGAUcgaucaGCGAg -3'
miRNA:   3'- gaGCuGGAGCGa-CAGCaGCCUG------UGCU- -5'
9189 5' -56 NC_002512.2 + 220734 0.66 0.969145
Target:  5'- uUCGACCUccaccucauggagCGCUGggcCGUCGaGGC-CGAc -3'
miRNA:   3'- gAGCUGGA-------------GCGACa--GCAGC-CUGuGCU- -5'
9189 5' -56 NC_002512.2 + 22936 0.66 0.966491
Target:  5'- -cUGACCUCGCUGaa---GGGCACGc -3'
miRNA:   3'- gaGCUGGAGCGACagcagCCUGUGCu -5'
9189 5' -56 NC_002512.2 + 21384 0.66 0.966491
Target:  5'- aCUCGucauUCUCGCUGUCGUCGucguaguCGCc- -3'
miRNA:   3'- -GAGCu---GGAGCGACAGCAGCcu-----GUGcu -5'
9189 5' -56 NC_002512.2 + 106854 0.66 0.966491
Target:  5'- gUCGAUCUCGaCgaccuccUCGUCGcGCACGAg -3'
miRNA:   3'- gAGCUGGAGC-Gac-----AGCAGCcUGUGCU- -5'
9189 5' -56 NC_002512.2 + 60925 0.66 0.963358
Target:  5'- -cCGACCgcgaagCGCUucgCGUCGGAgaGCGAg -3'
miRNA:   3'- gaGCUGGa-----GCGAca-GCAGCCUg-UGCU- -5'
9189 5' -56 NC_002512.2 + 109146 0.66 0.963358
Target:  5'- aCUCGACCgcccggcUGCUGagGUgaCGGAuCGCGAa -3'
miRNA:   3'- -GAGCUGGa------GCGACagCA--GCCU-GUGCU- -5'
9189 5' -56 NC_002512.2 + 3430 0.66 0.963358
Target:  5'- cCUCccGCCUCGCgggGcUgGUCGGugACGGc -3'
miRNA:   3'- -GAGc-UGGAGCGa--C-AgCAGCCugUGCU- -5'
9189 5' -56 NC_002512.2 + 67750 0.66 0.960027
Target:  5'- -cCGGCCUCGCgagccgggGUCGUCuccGGCGCc- -3'
miRNA:   3'- gaGCUGGAGCGa-------CAGCAGc--CUGUGcu -5'
9189 5' -56 NC_002512.2 + 77630 0.66 0.960027
Target:  5'- -gCGACgaCUCGCUGUCGagCGacGACACGu -3'
miRNA:   3'- gaGCUG--GAGCGACAGCa-GC--CUGUGCu -5'
9189 5' -56 NC_002512.2 + 111068 0.66 0.960027
Target:  5'- --gGACCUCGCgGUCGcCGacCACGAc -3'
miRNA:   3'- gagCUGGAGCGaCAGCaGCcuGUGCU- -5'
9189 5' -56 NC_002512.2 + 215168 0.66 0.960027
Target:  5'- -cUGGCCguccUGCUGcUCGgggagCGGACGCGGg -3'
miRNA:   3'- gaGCUGGa---GCGAC-AGCa----GCCUGUGCU- -5'
9189 5' -56 NC_002512.2 + 77135 0.66 0.956492
Target:  5'- --aGACCUCGCcGUCGggGGACcuucCGAc -3'
miRNA:   3'- gagCUGGAGCGaCAGCagCCUGu---GCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.