miRNA display CGI


Results 1 - 20 of 369 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9190 3' -62 NC_002512.2 + 117673 0.65 0.760563
Target:  5'- uGAGCCUGggcuacgggucgaCGAGCugcguggcGCACCuGCGGCg -3'
miRNA:   3'- gCUCGGGCg------------GCUCGu-------CGUGGuCGCUG- -5'
9190 3' -62 NC_002512.2 + 205660 0.66 0.755168
Target:  5'- gCGGGCCCGaCGccucGGaCAGCuCCGGCGuCa -3'
miRNA:   3'- -GCUCGGGCgGC----UC-GUCGuGGUCGCuG- -5'
9190 3' -62 NC_002512.2 + 67666 0.66 0.755168
Target:  5'- gCGGGCucgaCCGUCGAGUGGUGCCcguuguGGUGAUg -3'
miRNA:   3'- -GCUCG----GGCGGCUCGUCGUGG------UCGCUG- -5'
9190 3' -62 NC_002512.2 + 14409 0.66 0.755168
Target:  5'- aGAGCaggCGCCagGAGgAGUcgacGCCGGCGAUg -3'
miRNA:   3'- gCUCGg--GCGG--CUCgUCG----UGGUCGCUG- -5'
9190 3' -62 NC_002512.2 + 101606 0.66 0.755168
Target:  5'- gCGGGCggCCGUCG-GCccGGCGCCGG-GACg -3'
miRNA:   3'- -GCUCG--GGCGGCuCG--UCGUGGUCgCUG- -5'
9190 3' -62 NC_002512.2 + 155303 0.66 0.755168
Target:  5'- aGGGCCCcgGCCucGAGCaccagAGCGCCcaggucGCGGCg -3'
miRNA:   3'- gCUCGGG--CGG--CUCG-----UCGUGGu-----CGCUG- -5'
9190 3' -62 NC_002512.2 + 43697 0.66 0.755168
Target:  5'- cCGAGCCCuCCaggaGGCAGUucuCCAGacaGACg -3'
miRNA:   3'- -GCUCGGGcGGc---UCGUCGu--GGUCg--CUG- -5'
9190 3' -62 NC_002512.2 + 54250 0.66 0.755168
Target:  5'- --cGUCCGCagcggcaGGGCGGCGgcgUCGGCGACc -3'
miRNA:   3'- gcuCGGGCGg------CUCGUCGU---GGUCGCUG- -5'
9190 3' -62 NC_002512.2 + 80866 0.66 0.755168
Target:  5'- gGGGCUCgguGUCGGGCGGUcCgCGGCGGCc -3'
miRNA:   3'- gCUCGGG---CGGCUCGUCGuG-GUCGCUG- -5'
9190 3' -62 NC_002512.2 + 7565 0.66 0.755168
Target:  5'- -aGGCgCCGCCGcAGCcuccGGUACCgccuccGGCGGCa -3'
miRNA:   3'- gcUCG-GGCGGC-UCG----UCGUGG------UCGCUG- -5'
9190 3' -62 NC_002512.2 + 119102 0.66 0.755168
Target:  5'- gCGGaCCUGgUGGGCGucguGUACCGGCGGCg -3'
miRNA:   3'- -GCUcGGGCgGCUCGU----CGUGGUCGCUG- -5'
9190 3' -62 NC_002512.2 + 170813 0.66 0.755168
Target:  5'- gGAGCgaCGg-GGGCGGCAgCGGCGGCa -3'
miRNA:   3'- gCUCGg-GCggCUCGUCGUgGUCGCUG- -5'
9190 3' -62 NC_002512.2 + 123241 0.66 0.755168
Target:  5'- gGAGgacuaCUCGCCGAGcCGGCGCCgcuaccccccGGCgGACa -3'
miRNA:   3'- gCUC-----GGGCGGCUC-GUCGUGG----------UCG-CUG- -5'
9190 3' -62 NC_002512.2 + 157079 0.66 0.755168
Target:  5'- cCGGGgUCGCCGGcGCccacGGCGggcccgucCCGGCGACg -3'
miRNA:   3'- -GCUCgGGCGGCU-CG----UCGU--------GGUCGCUG- -5'
9190 3' -62 NC_002512.2 + 162067 0.66 0.755168
Target:  5'- uGAGCCUGCCGuGUuucGUcCCGGUGGg -3'
miRNA:   3'- gCUCGGGCGGCuCGu--CGuGGUCGCUg -5'
9190 3' -62 NC_002512.2 + 185519 0.66 0.755168
Target:  5'- gGGGCCUGCCGcucuucgagggGGUGGCcuACCGgccccGCGGCg -3'
miRNA:   3'- gCUCGGGCGGC-----------UCGUCG--UGGU-----CGCUG- -5'
9190 3' -62 NC_002512.2 + 202659 0.66 0.755168
Target:  5'- -cGGCCCGCUcccucaGGGCA-CGgCGGCGACu -3'
miRNA:   3'- gcUCGGGCGG------CUCGUcGUgGUCGCUG- -5'
9190 3' -62 NC_002512.2 + 207763 0.66 0.755168
Target:  5'- gGAGCCgcCGCCGuGGUGGUugCGG-GACg -3'
miRNA:   3'- gCUCGG--GCGGC-UCGUCGugGUCgCUG- -5'
9190 3' -62 NC_002512.2 + 212440 0.66 0.755168
Target:  5'- uCGGGCCgGCCG-GCcGCgACCGccGCGAg -3'
miRNA:   3'- -GCUCGGgCGGCuCGuCG-UGGU--CGCUg -5'
9190 3' -62 NC_002512.2 + 206998 0.66 0.755168
Target:  5'- cCGuGGCCCGCgGGGuCAGCA-UGGUGGCc -3'
miRNA:   3'- -GC-UCGGGCGgCUC-GUCGUgGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.