miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9190 5' -54.9 NC_002512.2 + 89520 0.66 0.97773
Target:  5'- aAGACCA-GGUGCcgGUUGUcgGCGCGg-- -3'
miRNA:   3'- -UCUGGUgCCACGa-CGACA--UGUGCagc -5'
9190 5' -54.9 NC_002512.2 + 32965 0.66 0.976313
Target:  5'- aAGACCGCcGUGCUcucggccuccaugagGCUGgccaugACGcCGUCGa -3'
miRNA:   3'- -UCUGGUGcCACGA---------------CGACa-----UGU-GCAGC- -5'
9190 5' -54.9 NC_002512.2 + 146323 0.66 0.973545
Target:  5'- cGGCCACGGccgcuccguccgcaUGCcgcucauguacaaGCUGgACGCGUCGg -3'
miRNA:   3'- uCUGGUGCC--------------ACGa------------CGACaUGUGCAGC- -5'
9190 5' -54.9 NC_002512.2 + 217376 0.66 0.972751
Target:  5'- cGGCC-UGGUGCac--GUACGCGUCGu -3'
miRNA:   3'- uCUGGuGCCACGacgaCAUGUGCAGC- -5'
9190 5' -54.9 NC_002512.2 + 145510 0.66 0.972751
Target:  5'- -uGCCGgGGcUGCUccgGCUcUGCGCGUCGg -3'
miRNA:   3'- ucUGGUgCC-ACGA---CGAcAUGUGCAGC- -5'
9190 5' -54.9 NC_002512.2 + 81567 0.66 0.972751
Target:  5'- gGGuuCACGG-GCagGUUGUGCACG-CGg -3'
miRNA:   3'- -UCugGUGCCaCGa-CGACAUGUGCaGC- -5'
9190 5' -54.9 NC_002512.2 + 67180 0.66 0.972751
Target:  5'- gAGACgaaGCGGgagcUGCUGCUGcuUACAUaGUCGu -3'
miRNA:   3'- -UCUGg--UGCC----ACGACGAC--AUGUG-CAGC- -5'
9190 5' -54.9 NC_002512.2 + 224827 0.66 0.969981
Target:  5'- -cGCCGCGG-GCggGCUGgACGCGUa- -3'
miRNA:   3'- ucUGGUGCCaCGa-CGACaUGUGCAgc -5'
9190 5' -54.9 NC_002512.2 + 39033 0.66 0.96732
Target:  5'- gAGACCgACGGUGUgagagcguuaccauCUGUccGCACGUCu -3'
miRNA:   3'- -UCUGG-UGCCACGac------------GACA--UGUGCAGc -5'
9190 5' -54.9 NC_002512.2 + 93282 0.66 0.967015
Target:  5'- gAGGgCGCGGcccGCUacCUGUACGCGUCc -3'
miRNA:   3'- -UCUgGUGCCa--CGAc-GACAUGUGCAGc -5'
9190 5' -54.9 NC_002512.2 + 159419 0.66 0.967015
Target:  5'- cGGAUCAuUGGUGUUGUU-UAUugGUCGg -3'
miRNA:   3'- -UCUGGU-GCCACGACGAcAUGugCAGC- -5'
9190 5' -54.9 NC_002512.2 + 88359 0.66 0.967015
Target:  5'- -cACCAUGGUGCaGaUGUGCGCgGUCu -3'
miRNA:   3'- ucUGGUGCCACGaCgACAUGUG-CAGc -5'
9190 5' -54.9 NC_002512.2 + 167076 0.66 0.967015
Target:  5'- cGGCCGCGacaUGCUGCUGgcCACcUCc -3'
miRNA:   3'- uCUGGUGCc--ACGACGACauGUGcAGc -5'
9190 5' -54.9 NC_002512.2 + 221472 0.66 0.967015
Target:  5'- cGGCCGCGGUGC-GCguuccugGCGC-UCGg -3'
miRNA:   3'- uCUGGUGCCACGaCGaca----UGUGcAGC- -5'
9190 5' -54.9 NC_002512.2 + 228078 0.66 0.967015
Target:  5'- gAGACgACGG-GCUGC---ACACgGUCGg -3'
miRNA:   3'- -UCUGgUGCCaCGACGacaUGUG-CAGC- -5'
9190 5' -54.9 NC_002512.2 + 92542 0.66 0.967015
Target:  5'- cGGCCGCGGcgGCcGCggcgACgACGUCGg -3'
miRNA:   3'- uCUGGUGCCa-CGaCGaca-UG-UGCAGC- -5'
9190 5' -54.9 NC_002512.2 + 155348 0.67 0.960473
Target:  5'- -cGCCGCGGccGCcugGCUGUACcuCGUCa -3'
miRNA:   3'- ucUGGUGCCa-CGa--CGACAUGu-GCAGc -5'
9190 5' -54.9 NC_002512.2 + 49671 0.67 0.960473
Target:  5'- cGGGgCGCGGgccgGCaGCcaGUGCAUGUCGa -3'
miRNA:   3'- -UCUgGUGCCa---CGaCGa-CAUGUGCAGC- -5'
9190 5' -54.9 NC_002512.2 + 7710 0.67 0.960473
Target:  5'- cGGCCGCGGcccgGgaGUAgGCGUCGg -3'
miRNA:   3'- uCUGGUGCCacgaCgaCAUgUGCAGC- -5'
9190 5' -54.9 NC_002512.2 + 97424 0.67 0.956888
Target:  5'- uGGCCACGaUGgUGCUG-GCGCuGUCGc -3'
miRNA:   3'- uCUGGUGCcACgACGACaUGUG-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.