miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9191 3' -54.5 NC_002512.2 + 79580 0.66 0.977723
Target:  5'- -cGCGacCUGGGagGGGAGGAgGAgcggGGCg -3'
miRNA:   3'- auCGC--GACCUagCCCUUCUgCUa---CUG- -5'
9191 3' -54.5 NC_002512.2 + 2810 0.66 0.977723
Target:  5'- cGGCGCccgaGGAagGGGAcggagAGACGG-GACg -3'
miRNA:   3'- aUCGCGa---CCUagCCCU-----UCUGCUaCUG- -5'
9191 3' -54.5 NC_002512.2 + 227969 0.66 0.977723
Target:  5'- aAGCGgaUGGA-CGGGAGGAgGGgaggaaggagUGACa -3'
miRNA:   3'- aUCGCg-ACCUaGCCCUUCUgCU----------ACUG- -5'
9191 3' -54.5 NC_002512.2 + 78325 0.66 0.977723
Target:  5'- --uCGCcGGcucUCGGGAAGGCGAgaccggGACg -3'
miRNA:   3'- aucGCGaCCu--AGCCCUUCUGCUa-----CUG- -5'
9191 3' -54.5 NC_002512.2 + 154573 0.66 0.977723
Target:  5'- gGGgGCaGGAUaaCGGcGAGGGCGAcGGCg -3'
miRNA:   3'- aUCgCGaCCUA--GCC-CUUCUGCUaCUG- -5'
9191 3' -54.5 NC_002512.2 + 53383 0.66 0.977723
Target:  5'- gGGCGCUGGAau-GGAcGACGGgcuuccUGGCg -3'
miRNA:   3'- aUCGCGACCUagcCCUuCUGCU------ACUG- -5'
9191 3' -54.5 NC_002512.2 + 134333 0.66 0.975291
Target:  5'- gGGCGC-GGAUCcgauagacgGGGAAGGUGgcGACg -3'
miRNA:   3'- aUCGCGaCCUAG---------CCCUUCUGCuaCUG- -5'
9191 3' -54.5 NC_002512.2 + 8859 0.66 0.975291
Target:  5'- gGGCGCgUGGAggGGGggGAggcCGGggucGGCg -3'
miRNA:   3'- aUCGCG-ACCUagCCCuuCU---GCUa---CUG- -5'
9191 3' -54.5 NC_002512.2 + 6817 0.66 0.975291
Target:  5'- -cGUGaacGGUCGGGAGGACGG-GACc -3'
miRNA:   3'- auCGCgacCUAGCCCUUCUGCUaCUG- -5'
9191 3' -54.5 NC_002512.2 + 32726 0.66 0.975291
Target:  5'- aGGCGC-GGGU--GGAAGACGGccgUGGCg -3'
miRNA:   3'- aUCGCGaCCUAgcCCUUCUGCU---ACUG- -5'
9191 3' -54.5 NC_002512.2 + 130183 0.66 0.975291
Target:  5'- cGGCGC-GGA-CGaGGAcgaGGACGAgGACg -3'
miRNA:   3'- aUCGCGaCCUaGC-CCU---UCUGCUaCUG- -5'
9191 3' -54.5 NC_002512.2 + 6525 0.66 0.975291
Target:  5'- aUAGaCGCcGGAUCGGcgggcggaGAAGACGAaccUGAg -3'
miRNA:   3'- -AUC-GCGaCCUAGCC--------CUUCUGCU---ACUg -5'
9191 3' -54.5 NC_002512.2 + 115955 0.66 0.973742
Target:  5'- gUGGCGCcGGcGUCGGGcccggcggccaugagGAGGCGGaagaUGGCg -3'
miRNA:   3'- -AUCGCGaCC-UAGCCC---------------UUCUGCU----ACUG- -5'
9191 3' -54.5 NC_002512.2 + 12700 0.66 0.972671
Target:  5'- -uGCGCaaccUGGcgC-GGAGGGCGAUGAa -3'
miRNA:   3'- auCGCG----ACCuaGcCCUUCUGCUACUg -5'
9191 3' -54.5 NC_002512.2 + 167218 0.66 0.972671
Target:  5'- gAGC-CUGuGUUGGGGGugaguGACGGUGACg -3'
miRNA:   3'- aUCGcGACcUAGCCCUU-----CUGCUACUG- -5'
9191 3' -54.5 NC_002512.2 + 126449 0.66 0.972671
Target:  5'- -cGCGCUcGGAcCGGGAcGACGcguucGACg -3'
miRNA:   3'- auCGCGA-CCUaGCCCUuCUGCua---CUG- -5'
9191 3' -54.5 NC_002512.2 + 50496 0.66 0.972671
Target:  5'- ---aGCUGGAUCGGc--GACGgcGACg -3'
miRNA:   3'- aucgCGACCUAGCCcuuCUGCuaCUG- -5'
9191 3' -54.5 NC_002512.2 + 113057 0.66 0.972671
Target:  5'- aGGCGCUGGAggugCGGGccgcccuGGACcc-GGCa -3'
miRNA:   3'- aUCGCGACCUa---GCCCu------UCUGcuaCUG- -5'
9191 3' -54.5 NC_002512.2 + 36148 0.66 0.972671
Target:  5'- -cGCGCUcuccagguaucgGGAugcUCGGGAAcGCGAUGGa -3'
miRNA:   3'- auCGCGA------------CCU---AGCCCUUcUGCUACUg -5'
9191 3' -54.5 NC_002512.2 + 77052 0.66 0.971847
Target:  5'- cGGCGaucgaagcugcuucCUGGAUcCGGGAcGAuuCGGUGGCg -3'
miRNA:   3'- aUCGC--------------GACCUA-GCCCUuCU--GCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.