miRNA display CGI


Results 1 - 20 of 432 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9191 5' -60.9 NC_002512.2 + 53335 0.66 0.8534
Target:  5'- cGGGUCCUgggCgUCUCUGaUCGcgucuCGCAGCCu -3'
miRNA:   3'- -CCUAGGG---GgAGGGGC-AGCu----GCGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 110344 0.66 0.8534
Target:  5'- cGGUCCCCgCUCCCCGcCuagcccuugaaGAUGCAcacgGCg -3'
miRNA:   3'- cCUAGGGG-GAGGGGCaG-----------CUGCGU----CGg -5'
9191 5' -60.9 NC_002512.2 + 32045 0.66 0.8534
Target:  5'- aGGGcCUCCCgccgCCCC-UCGAUGCA-CCu -3'
miRNA:   3'- -CCUaGGGGGa---GGGGcAGCUGCGUcGG- -5'
9191 5' -60.9 NC_002512.2 + 3904 0.66 0.8534
Target:  5'- cGGUCCCCUUgcCCCCGa-GAC-CGGUCg -3'
miRNA:   3'- cCUAGGGGGA--GGGGCagCUGcGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 124897 0.66 0.8534
Target:  5'- cGGAaCCCgggcuaCCUCCCCuaccUCGAgGCGGaCCc -3'
miRNA:   3'- -CCUaGGG------GGAGGGGc---AGCUgCGUC-GG- -5'
9191 5' -60.9 NC_002512.2 + 79953 0.66 0.8534
Target:  5'- gGGGUCCgCC-UgCCGUCGgaaGCGGUCg -3'
miRNA:   3'- -CCUAGGgGGaGgGGCAGCug-CGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 1951 0.66 0.8534
Target:  5'- --cUCCCCCgCCUCGUCcgccggcgucgGAgGCGGCg -3'
miRNA:   3'- ccuAGGGGGaGGGGCAG-----------CUgCGUCGg -5'
9191 5' -60.9 NC_002512.2 + 17348 0.66 0.8534
Target:  5'- -cAUCgUCgUCCCCGUCGACGaucCCg -3'
miRNA:   3'- ccUAGgGGgAGGGGCAGCUGCgucGG- -5'
9191 5' -60.9 NC_002512.2 + 130366 0.66 0.8534
Target:  5'- cGGG-CCUCCagcUCCCUcUCGAcCGCGGCa -3'
miRNA:   3'- -CCUaGGGGG---AGGGGcAGCU-GCGUCGg -5'
9191 5' -60.9 NC_002512.2 + 119197 0.66 0.8534
Target:  5'- ---gCCCCacgCUCCCCucgagcucgcgGUCGAUgacgaGCAGCCg -3'
miRNA:   3'- ccuaGGGG---GAGGGG-----------CAGCUG-----CGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 102319 0.66 0.8534
Target:  5'- cGGGUCCCggCUCCgggaggUCGUCGGCgGCGuccGCCg -3'
miRNA:   3'- -CCUAGGGg-GAGG------GGCAGCUG-CGU---CGG- -5'
9191 5' -60.9 NC_002512.2 + 50248 0.66 0.8534
Target:  5'- cGGcUCCCUCUUCUUcUUGGCGUAcGCCa -3'
miRNA:   3'- -CCuAGGGGGAGGGGcAGCUGCGU-CGG- -5'
9191 5' -60.9 NC_002512.2 + 35491 0.66 0.8534
Target:  5'- -cGUCCUCUUCUCCGaUCGG-GCGGUCc -3'
miRNA:   3'- ccUAGGGGGAGGGGC-AGCUgCGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 9654 0.66 0.8534
Target:  5'- -cGUCCgCCUCaCCCGcagCGAggcCGUGGCCu -3'
miRNA:   3'- ccUAGGgGGAG-GGGCa--GCU---GCGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 127818 0.66 0.8534
Target:  5'- cGGUCCgucgggCCUCCCgGaCGACG-AGCCg -3'
miRNA:   3'- cCUAGGg-----GGAGGGgCaGCUGCgUCGG- -5'
9191 5' -60.9 NC_002512.2 + 10093 0.66 0.852673
Target:  5'- -cGUCCCCUaucugugUCCCCGgccgGGC-CGGCCg -3'
miRNA:   3'- ccUAGGGGG-------AGGGGCag--CUGcGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 2423 0.66 0.852673
Target:  5'- cGGccgCCCCCggccucucCCCCGgcagcgCGAaggugacCGCGGCCc -3'
miRNA:   3'- -CCua-GGGGGa-------GGGGCa-----GCU-------GCGUCGG- -5'
9191 5' -60.9 NC_002512.2 + 155512 0.66 0.849013
Target:  5'- cGGcUCCCgCgagCCGUCGACGCcgcgacgggcgggacGGCCg -3'
miRNA:   3'- -CCuAGGGgGaggGGCAGCUGCG---------------UCGG- -5'
9191 5' -60.9 NC_002512.2 + 58251 0.66 0.846055
Target:  5'- cGGcGUCCCCCucgUCCCCGg-GACuCGGUg -3'
miRNA:   3'- -CC-UAGGGGG---AGGGGCagCUGcGUCGg -5'
9191 5' -60.9 NC_002512.2 + 55299 0.66 0.846055
Target:  5'- cGAUCgUCUcUCCCGUCGGuagGCGGCCc -3'
miRNA:   3'- cCUAGgGGGaGGGGCAGCUg--CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.