miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9192 3' -55.7 NC_002512.2 + 35554 0.67 0.938806
Target:  5'- -cGUGCGcgaccacgcAACCGUcCCGGGCCA-CGa -3'
miRNA:   3'- gaCACGCa--------UUGGCGuGGUCCGGUaGC- -5'
9192 3' -55.7 NC_002512.2 + 120307 0.67 0.938806
Target:  5'- uUGUGC--AGCCgguaGCACggaCAGGCCGUCGc -3'
miRNA:   3'- gACACGcaUUGG----CGUG---GUCCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 15824 0.67 0.934048
Target:  5'- ---gGCGU-GCCGCACgagCAGGCCGaCGa -3'
miRNA:   3'- gacaCGCAuUGGCGUG---GUCCGGUaGC- -5'
9192 3' -55.7 NC_002512.2 + 8460 0.67 0.929063
Target:  5'- ---cGCGgu-CCGCAUgGcGGCCGUCGg -3'
miRNA:   3'- gacaCGCauuGGCGUGgU-CCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 45167 0.67 0.929063
Target:  5'- ---cGCGUccGCCGCGC--GGCCGUCGa -3'
miRNA:   3'- gacaCGCAu-UGGCGUGguCCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 43187 0.67 0.929063
Target:  5'- cCUG-GCGgagaucccCCGCucCCGGGCCGUCc -3'
miRNA:   3'- -GACaCGCauu-----GGCGu-GGUCCGGUAGc -5'
9192 3' -55.7 NC_002512.2 + 28796 0.67 0.92385
Target:  5'- ---aGCGUGGCCGaCAUCGGGCgG-CGg -3'
miRNA:   3'- gacaCGCAUUGGC-GUGGUCCGgUaGC- -5'
9192 3' -55.7 NC_002512.2 + 67073 0.68 0.918409
Target:  5'- cCUGUGCGaguggaAACgGUGgCAGGUCGUCGu -3'
miRNA:   3'- -GACACGCa-----UUGgCGUgGUCCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 117722 0.68 0.912741
Target:  5'- -cGUGCG-GGCUcgaGCGCCGGcucGCCGUCGa -3'
miRNA:   3'- gaCACGCaUUGG---CGUGGUC---CGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 101866 0.68 0.912741
Target:  5'- ---cGCGUccCgGCGCCGGGCCGaCGg -3'
miRNA:   3'- gacaCGCAuuGgCGUGGUCCGGUaGC- -5'
9192 3' -55.7 NC_002512.2 + 19258 0.68 0.910997
Target:  5'- ---gGCGUAcucgcaguugcccaGCCGgACCAGGUgAUCGg -3'
miRNA:   3'- gacaCGCAU--------------UGGCgUGGUCCGgUAGC- -5'
9192 3' -55.7 NC_002512.2 + 113378 0.68 0.906847
Target:  5'- -cGUGU---ACCGCACCAgGGCCAg-- -3'
miRNA:   3'- gaCACGcauUGGCGUGGU-CCGGUagc -5'
9192 3' -55.7 NC_002512.2 + 155453 0.68 0.906847
Target:  5'- gUGaGCGa---CGCGCCGGGaCCGUCGg -3'
miRNA:   3'- gACaCGCauugGCGUGGUCC-GGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 62984 0.68 0.906847
Target:  5'- ---gGCGUGcCC-CGCgAGGCCGUCGa -3'
miRNA:   3'- gacaCGCAUuGGcGUGgUCCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 105198 0.68 0.905035
Target:  5'- ---gGcCGgcGCCGCGCCgacgccggacgaggAGGCCGUCGc -3'
miRNA:   3'- gacaC-GCauUGGCGUGG--------------UCCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 117083 0.68 0.900729
Target:  5'- aUGU-CGgaGCCGCacgaggGCCAGGCgGUCGa -3'
miRNA:   3'- gACAcGCauUGGCG------UGGUCCGgUAGC- -5'
9192 3' -55.7 NC_002512.2 + 12515 0.68 0.900729
Target:  5'- ---cGCGUAcgUGCACCAGGCCGcCa -3'
miRNA:   3'- gacaCGCAUugGCGUGGUCCGGUaGc -5'
9192 3' -55.7 NC_002512.2 + 34402 0.68 0.900729
Target:  5'- ---aGCGggAACCGCuCCgAGGUCGUCGg -3'
miRNA:   3'- gacaCGCa-UUGGCGuGG-UCCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 17995 0.68 0.900729
Target:  5'- cCUGUGCGUcggcgggcacuGGCgGCgggacgGCUGGGCCGUCc -3'
miRNA:   3'- -GACACGCA-----------UUGgCG------UGGUCCGGUAGc -5'
9192 3' -55.7 NC_002512.2 + 165769 0.68 0.89439
Target:  5'- -cGUGUGUGAgaaGCACgAGGCCAgCGa -3'
miRNA:   3'- gaCACGCAUUgg-CGUGgUCCGGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.