miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9192 5' -56.5 NC_002512.2 + 99635 0.66 0.959553
Target:  5'- gUCCGGaCCCCGAcgCUGGcggaGAGCucgggucgcgGGAACa -3'
miRNA:   3'- -GGGCUaGGGGCUa-GACC----CUCG----------UCUUG- -5'
9192 5' -56.5 NC_002512.2 + 26859 0.66 0.959553
Target:  5'- uCCUGAUCacgaUGAUCUGGG-GCAucACg -3'
miRNA:   3'- -GGGCUAGgg--GCUAGACCCuCGUcuUG- -5'
9192 5' -56.5 NC_002512.2 + 109969 0.66 0.959553
Target:  5'- gCCGcgCUCgaGAUCUuGGuGCAGAACa -3'
miRNA:   3'- gGGCuaGGGg-CUAGAcCCuCGUCUUG- -5'
9192 5' -56.5 NC_002512.2 + 158140 0.66 0.959553
Target:  5'- -gCGAaCCCCGuaGUCgcGGGAGCGGuACu -3'
miRNA:   3'- ggGCUaGGGGC--UAGa-CCCUCGUCuUG- -5'
9192 5' -56.5 NC_002512.2 + 45073 0.66 0.955971
Target:  5'- aCCCGggCCUCGA-CcGGGAGCucGGCc -3'
miRNA:   3'- -GGGCuaGGGGCUaGaCCCUCGucUUG- -5'
9192 5' -56.5 NC_002512.2 + 14596 0.66 0.955971
Target:  5'- gCCCGucUCCCCGuagaUGGGgaaguaguGGCGGAGg -3'
miRNA:   3'- -GGGCu-AGGGGCuag-ACCC--------UCGUCUUg -5'
9192 5' -56.5 NC_002512.2 + 9861 0.66 0.955971
Target:  5'- gCCCGGaCCCCGAgac-GGAGCGGc-- -3'
miRNA:   3'- -GGGCUaGGGGCUagacCCUCGUCuug -5'
9192 5' -56.5 NC_002512.2 + 107524 0.66 0.955971
Target:  5'- aCCCGGaaCCCGuUC-GGGGGCAGc-- -3'
miRNA:   3'- -GGGCUagGGGCuAGaCCCUCGUCuug -5'
9192 5' -56.5 NC_002512.2 + 127646 0.66 0.955971
Target:  5'- aCCCGggCCCgGGUC--GGA-CAGAGCg -3'
miRNA:   3'- -GGGCuaGGGgCUAGacCCUcGUCUUG- -5'
9192 5' -56.5 NC_002512.2 + 24667 0.66 0.955602
Target:  5'- uCCCGAUCUCCG-UCccGGGccgcucgGGCGGGGg -3'
miRNA:   3'- -GGGCUAGGGGCuAGa-CCC-------UCGUCUUg -5'
9192 5' -56.5 NC_002512.2 + 107557 0.66 0.952181
Target:  5'- cCCCaacaCCCCGAUCgGGGAGauCAGGu- -3'
miRNA:   3'- -GGGcua-GGGGCUAGaCCCUC--GUCUug -5'
9192 5' -56.5 NC_002512.2 + 133302 0.66 0.948177
Target:  5'- cCCCaGAggaCCCCGAggcGGGAGgAGGAUc -3'
miRNA:   3'- -GGG-CUa--GGGGCUagaCCCUCgUCUUG- -5'
9192 5' -56.5 NC_002512.2 + 110814 0.66 0.948177
Target:  5'- aCCCGGcaggaccUCCCGcgC-GGGGGCGGAAa -3'
miRNA:   3'- -GGGCUa------GGGGCuaGaCCCUCGUCUUg -5'
9192 5' -56.5 NC_002512.2 + 21158 0.66 0.948177
Target:  5'- cUCCGGUCggcggcgcuCCCGAUCUGGucGGC-GAGCc -3'
miRNA:   3'- -GGGCUAG---------GGGCUAGACCc-UCGuCUUG- -5'
9192 5' -56.5 NC_002512.2 + 43079 0.66 0.948177
Target:  5'- aCCGGUCCCgGggCgcGGcGAGCAGcgggGACg -3'
miRNA:   3'- gGGCUAGGGgCuaGa-CC-CUCGUC----UUG- -5'
9192 5' -56.5 NC_002512.2 + 93618 0.66 0.945245
Target:  5'- gCCCGAUCCCCucccgggacugcacgCUGGccaugcuGCAGGACc -3'
miRNA:   3'- -GGGCUAGGGGcua------------GACCcu-----CGUCUUG- -5'
9192 5' -56.5 NC_002512.2 + 179035 0.66 0.943957
Target:  5'- aCCCGGgagUCCCCguuacguuacguGAUCaaGGGGGaCGGGACc -3'
miRNA:   3'- -GGGCU---AGGGG------------CUAGa-CCCUC-GUCUUG- -5'
9192 5' -56.5 NC_002512.2 + 116688 0.66 0.943957
Target:  5'- aCCCGGcUCCCGcUC-GcGGAGCGGAcgGCg -3'
miRNA:   3'- -GGGCUaGGGGCuAGaC-CCUCGUCU--UG- -5'
9192 5' -56.5 NC_002512.2 + 94236 0.66 0.943957
Target:  5'- aUCCGAUgauaCUCCGGUagaGGAGCAGGAUc -3'
miRNA:   3'- -GGGCUA----GGGGCUAgacCCUCGUCUUG- -5'
9192 5' -56.5 NC_002512.2 + 109538 0.66 0.943957
Target:  5'- -aCGuacaCCCCcuUCUGGGuGCAGGACc -3'
miRNA:   3'- ggGCua--GGGGcuAGACCCuCGUCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.