miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 220798 0.66 0.983257
Target:  5'- gGAUCGuCCUCGAcCCGcUCGuGGuCCc -3'
miRNA:   3'- gCUAGCuGGAGUUcGGCaAGC-CCuGG- -5'
9193 3' -54.3 NC_002512.2 + 193435 0.66 0.983257
Target:  5'- aCGAgcgCGACCgCGGccGCCGguggCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUGGaGUU--CGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 220342 0.66 0.983982
Target:  5'- cCGGaCGGCCUCGucaacgccguGGCCGUggCcgccgccgccgugcuGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU----------UCGGCAa-G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218496 0.66 0.985025
Target:  5'- gGGUCGuCCgcgucCGAGCCG-UC-GGACCc -3'
miRNA:   3'- gCUAGCuGGa----GUUCGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 109816 0.66 0.985025
Target:  5'- -cAUCGACCccgcguucacgUCGAaccGCCGggcgUCGgGGACCg -3'
miRNA:   3'- gcUAGCUGG-----------AGUU---CGGCa---AGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 141857 0.66 0.986015
Target:  5'- aGGUCGGCCaacacggUCcucuggaacgccgcGAGCCGUcucUCGGGuuCCa -3'
miRNA:   3'- gCUAGCUGG-------AG--------------UUCGGCA---AGCCCu-GG- -5'
9193 3' -54.3 NC_002512.2 + 124740 0.66 0.986491
Target:  5'- cCGAcUCGGCCUguucgugGAGCCGUcgUCGGcccagacGACCg -3'
miRNA:   3'- -GCU-AGCUGGAg------UUCGGCA--AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 116752 0.66 0.986647
Target:  5'- gCGAUgGACCaggcCAGccGCUGUUCGuGGACg -3'
miRNA:   3'- -GCUAgCUGGa---GUU--CGGCAAGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 44458 0.67 0.976772
Target:  5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 55662 0.67 0.977006
Target:  5'- gGA-CGA-CUCGAcGCCGggCGGGGCg -3'
miRNA:   3'- gCUaGCUgGAGUU-CGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 88979 0.67 0.977006
Target:  5'- gGGUcucCGGCUUCGuGGCCGg--GGGGCCg -3'
miRNA:   3'- gCUA---GCUGGAGU-UCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 109281 0.67 0.977006
Target:  5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3'
miRNA:   3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 135328 0.67 0.977006
Target:  5'- aGGUCGGCgUC-AGCCGcgCcgGGGugCu -3'
miRNA:   3'- gCUAGCUGgAGuUCGGCaaG--CCCugG- -5'
9193 3' -54.3 NC_002512.2 + 148979 0.67 0.978598
Target:  5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3'
miRNA:   3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 5269 0.67 0.974583
Target:  5'- gCGG-CGACCcCGAGCCcggUCGGcACCg -3'
miRNA:   3'- -GCUaGCUGGaGUUCGGca-AGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 122030 0.67 0.971979
Target:  5'- gGAUCGGCgCUCGcGCaCGccCGGGGCg -3'
miRNA:   3'- gCUAGCUG-GAGUuCG-GCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 71738 0.67 0.971979
Target:  5'- gGAUgGugCUCAGGuaGUcgCGGaGGCCg -3'
miRNA:   3'- gCUAgCugGAGUUCggCAa-GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 127467 0.67 0.969188
Target:  5'- aGGUCGGgCagAAGCgGUUCGuGGCCg -3'
miRNA:   3'- gCUAGCUgGagUUCGgCAAGCcCUGG- -5'
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 102748 0.67 0.979255
Target:  5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3'
miRNA:   3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.