miRNA display CGI


Results 61 - 80 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 44458 0.67 0.976772
Target:  5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 99966 0.67 0.979255
Target:  5'- uGAUCGGCCU--GGCCccgCGGuGGCUg -3'
miRNA:   3'- gCUAGCUGGAguUCGGcaaGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 54356 0.67 0.974583
Target:  5'- uCGAUCGcggccacCCUcCAGGCC-UUCuGGACCg -3'
miRNA:   3'- -GCUAGCu------GGA-GUUCGGcAAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 133688 0.67 0.979255
Target:  5'- uGGcCGACCUCGcGGCCGccUCccGGACCa -3'
miRNA:   3'- gCUaGCUGGAGU-UCGGCa-AGc-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 149965 0.67 0.981336
Target:  5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3'
miRNA:   3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 102748 0.67 0.979255
Target:  5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3'
miRNA:   3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 220485 0.67 0.976058
Target:  5'- -cGUCcGCCUCAcccgcagcgaGGCCGUggccugcgucgccCGGGACCu -3'
miRNA:   3'- gcUAGcUGGAGU----------UCGGCAa------------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 98828 0.67 0.974583
Target:  5'- gGAUCGGCCUCcGGCg---CGGcGCCg -3'
miRNA:   3'- gCUAGCUGGAGuUCGgcaaGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 188283 0.67 0.974583
Target:  5'- aGGUCGAgUUCAcGGCCGgcaacCGGGugGCCu -3'
miRNA:   3'- gCUAGCUgGAGU-UCGGCaa---GCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 95099 0.67 0.974583
Target:  5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3'
miRNA:   3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 87677 0.67 0.974583
Target:  5'- gCGA-CGACgUCGAGaCCGa-CGGGACg -3'
miRNA:   3'- -GCUaGCUGgAGUUC-GGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 169620 0.67 0.974583
Target:  5'- aGGUCGGCCggCAGGUCcaggugUCGGGuCUg -3'
miRNA:   3'- gCUAGCUGGa-GUUCGGca----AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 197783 0.67 0.971979
Target:  5'- cCGAccUCGACCgcgaggacaccCGGGCCGccaUCGGcGACCc -3'
miRNA:   3'- -GCU--AGCUGGa----------GUUCGGCa--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 140538 0.67 0.971979
Target:  5'- aCGGcCG-CCUCGAcGCCGUUCuGGuCCu -3'
miRNA:   3'- -GCUaGCuGGAGUU-CGGCAAGcCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 96213 0.67 0.971979
Target:  5'- aGGUCGGCCaCGgcGGCCGcggcggcggCGGcGACCg -3'
miRNA:   3'- gCUAGCUGGaGU--UCGGCaa-------GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 149114 0.67 0.969189
Target:  5'- cCGcUCcuCCUCGAGCCGcgaggaccccCGGGACCc -3'
miRNA:   3'- -GCuAGcuGGAGUUCGGCaa--------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 196425 0.67 0.969189
Target:  5'- gCGG-CGGCCg--GGUCGggagaggUCGGGGCCa -3'
miRNA:   3'- -GCUaGCUGGaguUCGGCa------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218206 0.67 0.968899
Target:  5'- --cUCGggcccccGCCUCGGGCCGcggCGGG-CCg -3'
miRNA:   3'- gcuAGC-------UGGAGUUCGGCaa-GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 148979 0.67 0.978598
Target:  5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3'
miRNA:   3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.