miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 149965 0.67 0.981336
Target:  5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3'
miRNA:   3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 196425 0.67 0.969189
Target:  5'- gCGG-CGGCCg--GGUCGggagaggUCGGGGCCa -3'
miRNA:   3'- -GCUaGCUGGaguUCGGCa------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218206 0.67 0.968899
Target:  5'- --cUCGggcccccGCCUCGGGCCGcggCGGG-CCg -3'
miRNA:   3'- gcuAGC-------UGGAGUUCGGCaa-GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 135328 0.67 0.977006
Target:  5'- aGGUCGGCgUC-AGCCGcgCcgGGGugCu -3'
miRNA:   3'- gCUAGCUGgAGuUCGGCaaG--CCCugG- -5'
9193 3' -54.3 NC_002512.2 + 95099 0.67 0.974583
Target:  5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3'
miRNA:   3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 44458 0.67 0.976772
Target:  5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 228144 0.67 0.981336
Target:  5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 35027 0.67 0.979255
Target:  5'- gGAaCGGCUg-AGGCCGaUCGGGGuCCg -3'
miRNA:   3'- gCUaGCUGGagUUCGGCaAGCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 129492 0.68 0.95964
Target:  5'- aGA-CGACgCUCuccgcGGCCGggaagUCGGGAgCCg -3'
miRNA:   3'- gCUaGCUG-GAGu----UCGGCa----AGCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 107011 0.68 0.967422
Target:  5'- gGGUCGGCCgaGAGCCGggcgCgcucccgacggaagaGGGACCc -3'
miRNA:   3'- gCUAGCUGGagUUCGGCaa--G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 226316 0.68 0.966205
Target:  5'- ----gGGCCUgUggGCCGUggcUCGGGACg -3'
miRNA:   3'- gcuagCUGGA-GuuCGGCA---AGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 200698 0.68 0.963024
Target:  5'- uCGGUCG-UCUCGGGUgGcgUCGGGcuGCCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGgCa-AGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 88150 0.68 0.952246
Target:  5'- aCGAUCcGCCcguGGCCGUcgugCGGGAaCCg -3'
miRNA:   3'- -GCUAGcUGGaguUCGGCAa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 203974 0.68 0.952246
Target:  5'- -cAUCGACCUCAuGGaCCGgaUCcGGACCg -3'
miRNA:   3'- gcUAGCUGGAGU-UC-GGCa-AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 226195 0.68 0.95964
Target:  5'- gGGUCGACCUCc-GUCGgggaCGGGAggaCCu -3'
miRNA:   3'- gCUAGCUGGAGuuCGGCaa--GCCCU---GG- -5'
9193 3' -54.3 NC_002512.2 + 114171 0.68 0.952246
Target:  5'- cCGGUCcuCCUCGGuggcGCCGgcgUCGGGcCCg -3'
miRNA:   3'- -GCUAGcuGGAGUU----CGGCa--AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 154516 0.68 0.95964
Target:  5'- uCGggCGAUgaCUCAgccGGCgGUUCGGG-CCg -3'
miRNA:   3'- -GCuaGCUG--GAGU---UCGgCAAGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 227998 0.68 0.956048
Target:  5'- cCGAg-GGCCg-GAGCCGgaCGGGACg -3'
miRNA:   3'- -GCUagCUGGagUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 216047 0.68 0.956048
Target:  5'- gCGAgugCGAC----GGgCGUUCGGGGCCg -3'
miRNA:   3'- -GCUa--GCUGgaguUCgGCAAGCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.