miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 88150 0.68 0.952246
Target:  5'- aCGAUCcGCCcguGGCCGUcgugCGGGAaCCg -3'
miRNA:   3'- -GCUAGcUGGaguUCGGCAa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 129492 0.68 0.95964
Target:  5'- aGA-CGACgCUCuccgcGGCCGggaagUCGGGAgCCg -3'
miRNA:   3'- gCUaGCUG-GAGu----UCGGCa----AGCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 216047 0.68 0.956048
Target:  5'- gCGAgugCGAC----GGgCGUUCGGGGCCg -3'
miRNA:   3'- -GCUa--GCUGgaguUCgGCAAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 227998 0.68 0.956048
Target:  5'- cCGAg-GGCCg-GAGCCGgaCGGGACg -3'
miRNA:   3'- -GCUagCUGGagUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 96710 0.68 0.956048
Target:  5'- uCGAcuauUUGACCcccgCGGGCCGgcccgCGGGAaCCg -3'
miRNA:   3'- -GCU----AGCUGGa---GUUCGGCaa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 114171 0.68 0.952246
Target:  5'- cCGGUCcuCCUCGGuggcGCCGgcgUCGGGcCCg -3'
miRNA:   3'- -GCUAGcuGGAGUU----CGGCa--AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 145199 0.68 0.966205
Target:  5'- gGAguUCGACCcCGGGCUG--CGGGACg -3'
miRNA:   3'- gCU--AGCUGGaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 226316 0.68 0.966205
Target:  5'- ----gGGCCUgUggGCCGUggcUCGGGACg -3'
miRNA:   3'- gcuagCUGGA-GuuCGGCA---AGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 107011 0.68 0.967422
Target:  5'- gGGUCGGCCgaGAGCCGggcgCgcucccgacggaagaGGGACCc -3'
miRNA:   3'- gCUAGCUGGagUUCGGCaa--G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 3512 0.68 0.952245
Target:  5'- -cGUCGGCCcuccaccCGAGCCcg-CGGGGCCc -3'
miRNA:   3'- gcUAGCUGGa------GUUCGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 16180 0.68 0.956048
Target:  5'- ---cCGACgUCGaagaAGCCaGUUCGaGGACCg -3'
miRNA:   3'- gcuaGCUGgAGU----UCGG-CAAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 187781 0.68 0.956048
Target:  5'- uCGAUUGGCCUCGAuaCGUaccaCGGGAa- -3'
miRNA:   3'- -GCUAGCUGGAGUUcgGCAa---GCCCUgg -5'
9193 3' -54.3 NC_002512.2 + 86969 0.68 0.95964
Target:  5'- uCGGUCGACgaagcGGCCGUgaugUGGGACg -3'
miRNA:   3'- -GCUAGCUGgagu-UCGGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 19375 0.68 0.966205
Target:  5'- uCGG-CGGCCUCGcGCuCGcgUCGGGcCCu -3'
miRNA:   3'- -GCUaGCUGGAGUuCG-GCa-AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 117107 0.68 0.963024
Target:  5'- gGGUCaucaACCUCAAGgccaCCGUgucgCGGGACg -3'
miRNA:   3'- gCUAGc---UGGAGUUC----GGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 79178 0.68 0.966205
Target:  5'- aCGGUCGGCCgcCGAGagccaacgguCCGUcggCGGcGACCg -3'
miRNA:   3'- -GCUAGCUGGa-GUUC----------GGCAa--GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 120731 0.68 0.966205
Target:  5'- gCGAUCcgucACCUCAgcAGCCGggCGGcGAguCCg -3'
miRNA:   3'- -GCUAGc---UGGAGU--UCGGCaaGCC-CU--GG- -5'
9193 3' -54.3 NC_002512.2 + 102114 0.69 0.943992
Target:  5'- ---gCGGCCUC-GGCCGUcggaggGGGACCc -3'
miRNA:   3'- gcuaGCUGGAGuUCGGCAag----CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 137787 0.69 0.939537
Target:  5'- aGGUCGGCgCUCGgcgGGCCGcgcgucCGGcGGCCg -3'
miRNA:   3'- gCUAGCUG-GAGU---UCGGCaa----GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 116159 0.69 0.943992
Target:  5'- --cUCGGCCcgCAGaucGCCGcccgcgUCGGGACCc -3'
miRNA:   3'- gcuAGCUGGa-GUU---CGGCa-----AGCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.