miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 98941 0.7 0.913915
Target:  5'- gCGGUCGuccGCCUCGAGCUcagUCGGuGuCCg -3'
miRNA:   3'- -GCUAGC---UGGAGUUCGGca-AGCC-CuGG- -5'
9193 3' -54.3 NC_002512.2 + 154153 0.7 0.919486
Target:  5'- uCGGUCG-CCUC---CCGUUCGGcgGACCg -3'
miRNA:   3'- -GCUAGCuGGAGuucGGCAAGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 5957 0.7 0.895876
Target:  5'- gGAUCGACCUCc--CCGUcCGGcucGACCu -3'
miRNA:   3'- gCUAGCUGGAGuucGGCAaGCC---CUGG- -5'
9193 3' -54.3 NC_002512.2 + 13554 0.7 0.895876
Target:  5'- aGAUCGAgCCgcCGA-CCGcgUCGGGGCCg -3'
miRNA:   3'- gCUAGCU-GGa-GUUcGGCa-AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 36393 0.7 0.913915
Target:  5'- gGcgCGACCgaggucgucCAGGCCG-UCGuGGGCCu -3'
miRNA:   3'- gCuaGCUGGa--------GUUCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 79123 0.7 0.908122
Target:  5'- cCGAgUCGGCCgUCAaucacgggucugGGCCGcgCGcGGGCCg -3'
miRNA:   3'- -GCU-AGCUGG-AGU------------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 221180 0.7 0.895876
Target:  5'- cCGAcCGACCUCgGAGUgGa-CGGGACCc -3'
miRNA:   3'- -GCUaGCUGGAG-UUCGgCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 97202 0.7 0.908122
Target:  5'- cCGucugCGGCggCGGGCCGggCGGGACg -3'
miRNA:   3'- -GCua--GCUGgaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 114525 0.7 0.895876
Target:  5'- cCGGUCGACCugcugacgcacaUCAAGCUGagCGuGGGCg -3'
miRNA:   3'- -GCUAGCUGG------------AGUUCGGCaaGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 186527 0.7 0.919487
Target:  5'- -cGUCGACCUCu-G-CGUgcaCGGGGCCg -3'
miRNA:   3'- gcUAGCUGGAGuuCgGCAa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102947 0.7 0.919486
Target:  5'- gGGUCGACCg-GGGCgCGggCGGGuaucGCCa -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCaaGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 171732 0.7 0.895876
Target:  5'- aCGAUCggGACgUCGAGC---UCGGGGCCc -3'
miRNA:   3'- -GCUAG--CUGgAGUUCGgcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 195397 0.69 0.924835
Target:  5'- gGGUCGACCggGAGCuCGUcuucUCgGGGACg -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCA----AG-CCCUGg -5'
9193 3' -54.3 NC_002512.2 + 70623 0.69 0.929457
Target:  5'- aCGGUCGAUCaUCGAacaguguGCCG-UCaGGACCa -3'
miRNA:   3'- -GCUAGCUGG-AGUU-------CGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 99790 0.69 0.934859
Target:  5'- --cUCGACCgcggCAcaaaacgcucAGCCaguUUCGGGACCg -3'
miRNA:   3'- gcuAGCUGGa---GU----------UCGGc--AAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 124662 0.69 0.939537
Target:  5'- uGAUCGucacCCUCAccGCCagaCGGGACCu -3'
miRNA:   3'- gCUAGCu---GGAGUu-CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 197186 0.69 0.939537
Target:  5'- --uUCGuCCUCAuggacCCGcUCGGGGCCg -3'
miRNA:   3'- gcuAGCuGGAGUuc---GGCaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 127646 0.69 0.943992
Target:  5'- gGAUCGGguCgCUCGgacGGCCGgUCGaGGGCCg -3'
miRNA:   3'- gCUAGCU--G-GAGU---UCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 111379 0.69 0.938157
Target:  5'- uCGAggaaGACCUCGuAGCCGUcccgccccggcagcUCGGcGCCg -3'
miRNA:   3'- -GCUag--CUGGAGU-UCGGCA--------------AGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 115664 0.69 0.934859
Target:  5'- cCGAUCGGCCUgCAcgugGGCuCGggCcGGGCCu -3'
miRNA:   3'- -GCUAGCUGGA-GU----UCG-GCaaGcCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.