miRNA display CGI


Results 61 - 80 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 70623 0.69 0.929457
Target:  5'- aCGGUCGAUCaUCGAacaguguGCCG-UCaGGACCa -3'
miRNA:   3'- -GCUAGCUGG-AGUU-------CGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 195397 0.69 0.924835
Target:  5'- gGGUCGACCggGAGCuCGUcuucUCgGGGACg -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCA----AG-CCCUGg -5'
9193 3' -54.3 NC_002512.2 + 209848 0.69 0.924835
Target:  5'- gGAUCGGCuCUUcGGCUGccugCGGGACg -3'
miRNA:   3'- gCUAGCUG-GAGuUCGGCaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 158965 0.69 0.943992
Target:  5'- ---aCGGCggCGAGCgGUUCGGcGGCCa -3'
miRNA:   3'- gcuaGCUGgaGUUCGgCAAGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 182659 0.69 0.945713
Target:  5'- --cUCGGCCUCGccgaacuccuugauGCgGUUCuGGGGCCg -3'
miRNA:   3'- gcuAGCUGGAGUu-------------CGgCAAG-CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 84840 0.69 0.924834
Target:  5'- uGGUCGAUCUCccGGCCGUccCGGGcguugcgcGCCc -3'
miRNA:   3'- gCUAGCUGGAGu-UCGGCAa-GCCC--------UGG- -5'
9193 3' -54.3 NC_002512.2 + 2795 0.69 0.929959
Target:  5'- cCGAccCGGCCggcGGCCGg-CGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaguUCGGCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 8923 0.69 0.934859
Target:  5'- aGggCGGCCUC-GGCCGggUCGGcGAUg -3'
miRNA:   3'- gCuaGCUGGAGuUCGGCa-AGCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 49631 0.69 0.934859
Target:  5'- gGAUCGuCCgggCGAGCCGggaccagUC-GGACCc -3'
miRNA:   3'- gCUAGCuGGa--GUUCGGCa------AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 55018 0.69 0.934859
Target:  5'- uCGAcgUCGAUCgaGAGCCGgUCGGG-CCg -3'
miRNA:   3'- -GCU--AGCUGGagUUCGGCaAGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 100176 0.69 0.934859
Target:  5'- gGAUCGAcaaccccgguuaCCUCGAGUCGgacggcgaUUCGGGcuacGCCg -3'
miRNA:   3'- gCUAGCU------------GGAGUUCGGC--------AAGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 27846 0.69 0.939537
Target:  5'- gCGAcaCGACCgCGAGCCGgaccggcggGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaGUUCGGCaag------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 137787 0.69 0.939537
Target:  5'- aGGUCGGCgCUCGgcgGGCCGcgcgucCGGcGGCCg -3'
miRNA:   3'- gCUAGCUG-GAGU---UCGGCaa----GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 82532 0.69 0.939537
Target:  5'- cCGGUCGGCCgCGcuCUGUcCGGGACg -3'
miRNA:   3'- -GCUAGCUGGaGUucGGCAaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 102114 0.69 0.943992
Target:  5'- ---gCGGCCUC-GGCCGUcggaggGGGACCc -3'
miRNA:   3'- gcuaGCUGGAGuUCGGCAag----CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 116159 0.69 0.943992
Target:  5'- --cUCGGCCcgCAGaucGCCGcccgcgUCGGGACCc -3'
miRNA:   3'- gcuAGCUGGa-GUU---CGGCa-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 164275 0.69 0.949861
Target:  5'- uCGAUCG-CCUCGGGCUucgucuccUuccucaccaaucccuUCGGGACCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGGc-------A---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 190069 0.69 0.948228
Target:  5'- aCGAgcuggccgCGGCCggucagCGGGCuCGgcugCGGGACCu -3'
miRNA:   3'- -GCUa-------GCUGGa-----GUUCG-GCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 203974 0.68 0.952246
Target:  5'- -cAUCGACCUCAuGGaCCGgaUCcGGACCg -3'
miRNA:   3'- gcUAGCUGGAGU-UC-GGCa-AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 88150 0.68 0.952246
Target:  5'- aCGAUCcGCCcguGGCCGUcgugCGGGAaCCg -3'
miRNA:   3'- -GCUAGcUGGaguUCGGCAa---GCCCU-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.