miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 226316 0.68 0.966205
Target:  5'- ----gGGCCUgUggGCCGUggcUCGGGACg -3'
miRNA:   3'- gcuagCUGGA-GuuCGGCA---AGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 107011 0.68 0.967422
Target:  5'- gGGUCGGCCgaGAGCCGggcgCgcucccgacggaagaGGGACCc -3'
miRNA:   3'- gCUAGCUGGagUUCGGCaa--G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102063 0.68 0.966205
Target:  5'- cCGA-CGACCUC---CCGgagcCGGGACCc -3'
miRNA:   3'- -GCUaGCUGGAGuucGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 120731 0.68 0.966205
Target:  5'- gCGAUCcgucACCUCAgcAGCCGggCGGcGAguCCg -3'
miRNA:   3'- -GCUAGc---UGGAGU--UCGGCaaGCC-CU--GG- -5'
9193 3' -54.3 NC_002512.2 + 79178 0.68 0.966205
Target:  5'- aCGGUCGGCCgcCGAGagccaacgguCCGUcggCGGcGACCg -3'
miRNA:   3'- -GCUAGCUGGa-GUUC----------GGCAa--GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 216047 0.68 0.956048
Target:  5'- gCGAgugCGAC----GGgCGUUCGGGGCCg -3'
miRNA:   3'- -GCUa--GCUGgaguUCgGCAAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 197783 0.67 0.971979
Target:  5'- cCGAccUCGACCgcgaggacaccCGGGCCGccaUCGGcGACCc -3'
miRNA:   3'- -GCU--AGCUGGa----------GUUCGGCa--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 148979 0.67 0.978598
Target:  5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3'
miRNA:   3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102748 0.67 0.979255
Target:  5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3'
miRNA:   3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 149965 0.67 0.981336
Target:  5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3'
miRNA:   3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 228144 0.67 0.981336
Target:  5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 95099 0.67 0.974583
Target:  5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3'
miRNA:   3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 87677 0.67 0.974583
Target:  5'- gCGA-CGACgUCGAGaCCGa-CGGGACg -3'
miRNA:   3'- -GCUaGCUGgAGUUC-GGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 218206 0.67 0.968899
Target:  5'- --cUCGggcccccGCCUCGGGCCGcggCGGG-CCg -3'
miRNA:   3'- gcuAGC-------UGGAGUUCGGCaa-GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 196425 0.67 0.969189
Target:  5'- gCGG-CGGCCg--GGUCGggagaggUCGGGGCCa -3'
miRNA:   3'- -GCUaGCUGGaguUCGGCa------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 169620 0.67 0.974583
Target:  5'- aGGUCGGCCggCAGGUCcaggugUCGGGuCUg -3'
miRNA:   3'- gCUAGCUGGa-GUUCGGca----AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 96213 0.67 0.971979
Target:  5'- aGGUCGGCCaCGgcGGCCGcggcggcggCGGcGACCg -3'
miRNA:   3'- gCUAGCUGGaGU--UCGGCaa-------GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 140538 0.67 0.971979
Target:  5'- aCGGcCG-CCUCGAcGCCGUUCuGGuCCu -3'
miRNA:   3'- -GCUaGCuGGAGUU-CGGCAAGcCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 149114 0.67 0.969189
Target:  5'- cCGcUCcuCCUCGAGCCGcgaggaccccCGGGACCc -3'
miRNA:   3'- -GCuAGcuGGAGUUCGGCaa--------GCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.