miRNA display CGI


Results 41 - 60 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 171732 0.7 0.895876
Target:  5'- aCGAUCggGACgUCGAGC---UCGGGGCCc -3'
miRNA:   3'- -GCUAG--CUGgAGUUCGgcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 114525 0.7 0.895876
Target:  5'- cCGGUCGACCugcugacgcacaUCAAGCUGagCGuGGGCg -3'
miRNA:   3'- -GCUAGCUGG------------AGUUCGGCaaGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 97202 0.7 0.908122
Target:  5'- cCGucugCGGCggCGGGCCGggCGGGACg -3'
miRNA:   3'- -GCua--GCUGgaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 79123 0.7 0.908122
Target:  5'- cCGAgUCGGCCgUCAaucacgggucugGGCCGcgCGcGGGCCg -3'
miRNA:   3'- -GCU-AGCUGG-AGU------------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 36393 0.7 0.913915
Target:  5'- gGcgCGACCgaggucgucCAGGCCG-UCGuGGGCCu -3'
miRNA:   3'- gCuaGCUGGa--------GUUCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 148406 0.7 0.913915
Target:  5'- uGGcCGACCU---GCCGUgccuccugCGGGACCg -3'
miRNA:   3'- gCUaGCUGGAguuCGGCAa-------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 74581 0.7 0.913915
Target:  5'- aGAUCGuCCUCGgccauggucacGGCCGa-CGcGGACCg -3'
miRNA:   3'- gCUAGCuGGAGU-----------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 98941 0.7 0.913915
Target:  5'- gCGGUCGuccGCCUCGAGCUcagUCGGuGuCCg -3'
miRNA:   3'- -GCUAGC---UGGAGUUCGGca-AGCC-CuGG- -5'
9193 3' -54.3 NC_002512.2 + 154153 0.7 0.919486
Target:  5'- uCGGUCG-CCUC---CCGUUCGGcgGACCg -3'
miRNA:   3'- -GCUAGCuGGAGuucGGCAAGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 102947 0.7 0.919486
Target:  5'- gGGUCGACCg-GGGCgCGggCGGGuaucGCCa -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCaaGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 117951 0.7 0.919487
Target:  5'- uGAgcgcCGACCUgGAGCUGUUCcGGcACCc -3'
miRNA:   3'- gCUa---GCUGGAgUUCGGCAAGcCC-UGG- -5'
9193 3' -54.3 NC_002512.2 + 186527 0.7 0.919487
Target:  5'- -cGUCGACCUCu-G-CGUgcaCGGGGCCg -3'
miRNA:   3'- gcUAGCUGGAGuuCgGCAa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 84840 0.69 0.924834
Target:  5'- uGGUCGAUCUCccGGCCGUccCGGGcguugcgcGCCc -3'
miRNA:   3'- gCUAGCUGGAGu-UCGGCAa-GCCC--------UGG- -5'
9193 3' -54.3 NC_002512.2 + 195397 0.69 0.924835
Target:  5'- gGGUCGACCggGAGCuCGUcuucUCgGGGACg -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCA----AG-CCCUGg -5'
9193 3' -54.3 NC_002512.2 + 209848 0.69 0.924835
Target:  5'- gGAUCGGCuCUUcGGCUGccugCGGGACg -3'
miRNA:   3'- gCUAGCUG-GAGuUCGGCaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 70623 0.69 0.929457
Target:  5'- aCGGUCGAUCaUCGAacaguguGCCG-UCaGGACCa -3'
miRNA:   3'- -GCUAGCUGG-AGUU-------CGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 2795 0.69 0.929959
Target:  5'- cCGAccCGGCCggcGGCCGg-CGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaguUCGGCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 115664 0.69 0.934859
Target:  5'- cCGAUCGGCCUgCAcgugGGCuCGggCcGGGCCu -3'
miRNA:   3'- -GCUAGCUGGA-GU----UCG-GCaaGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 99790 0.69 0.934859
Target:  5'- --cUCGACCgcggCAcaaaacgcucAGCCaguUUCGGGACCg -3'
miRNA:   3'- gcuAGCUGGa---GU----------UCGGc--AAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 8923 0.69 0.934859
Target:  5'- aGggCGGCCUC-GGCCGggUCGGcGAUg -3'
miRNA:   3'- gCuaGCUGGAGuUCGGCa-AGCC-CUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.