miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 8923 0.69 0.934859
Target:  5'- aGggCGGCCUC-GGCCGggUCGGcGAUg -3'
miRNA:   3'- gCuaGCUGGAGuUCGGCa-AGCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 49631 0.69 0.934859
Target:  5'- gGAUCGuCCgggCGAGCCGggaccagUC-GGACCc -3'
miRNA:   3'- gCUAGCuGGa--GUUCGGCa------AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 100176 0.69 0.934859
Target:  5'- gGAUCGAcaaccccgguuaCCUCGAGUCGgacggcgaUUCGGGcuacGCCg -3'
miRNA:   3'- gCUAGCU------------GGAGUUCGGC--------AAGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 111379 0.69 0.938157
Target:  5'- uCGAggaaGACCUCGuAGCCGUcccgccccggcagcUCGGcGCCg -3'
miRNA:   3'- -GCUag--CUGGAGU-UCGGCA--------------AGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 27846 0.69 0.939537
Target:  5'- gCGAcaCGACCgCGAGCCGgaccggcggGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaGUUCGGCaag------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 137787 0.69 0.939537
Target:  5'- aGGUCGGCgCUCGgcgGGCCGcgcgucCGGcGGCCg -3'
miRNA:   3'- gCUAGCUG-GAGU---UCGGCaa----GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 82532 0.69 0.939537
Target:  5'- cCGGUCGGCCgCGcuCUGUcCGGGACg -3'
miRNA:   3'- -GCUAGCUGGaGUucGGCAaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 124662 0.69 0.939537
Target:  5'- uGAUCGucacCCUCAccGCCagaCGGGACCu -3'
miRNA:   3'- gCUAGCu---GGAGUu-CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 197186 0.69 0.939537
Target:  5'- --uUCGuCCUCAuggacCCGcUCGGGGCCg -3'
miRNA:   3'- gcuAGCuGGAGUuc---GGCaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 103362 0.69 0.939537
Target:  5'- aCGGUCGAggUCAGGCCGc-CGGaGCCg -3'
miRNA:   3'- -GCUAGCUggAGUUCGGCaaGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 103635 0.69 0.943557
Target:  5'- aGGUCGGCUUCGgacacccGGCCcuccUCGGcGGCCa -3'
miRNA:   3'- gCUAGCUGGAGU-------UCGGca--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 102114 0.69 0.943992
Target:  5'- ---gCGGCCUC-GGCCGUcggaggGGGACCc -3'
miRNA:   3'- gcuaGCUGGAGuUCGGCAag----CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 127646 0.69 0.943992
Target:  5'- gGAUCGGguCgCUCGgacGGCCGgUCGaGGGCCg -3'
miRNA:   3'- gCUAGCU--G-GAGU---UCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 116159 0.69 0.943992
Target:  5'- --cUCGGCCcgCAGaucGCCGcccgcgUCGGGACCc -3'
miRNA:   3'- gcuAGCUGGa-GUU---CGGCa-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 158965 0.69 0.943992
Target:  5'- ---aCGGCggCGAGCgGUUCGGcGGCCa -3'
miRNA:   3'- gcuaGCUGgaGUUCGgCAAGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 182659 0.69 0.945713
Target:  5'- --cUCGGCCUCGccgaacuccuugauGCgGUUCuGGGGCCg -3'
miRNA:   3'- gcuAGCUGGAGUu-------------CGgCAAG-CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 190069 0.69 0.948228
Target:  5'- aCGAgcuggccgCGGCCggucagCGGGCuCGgcugCGGGACCu -3'
miRNA:   3'- -GCUa-------GCUGGa-----GUUCG-GCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 164275 0.69 0.949861
Target:  5'- uCGAUCG-CCUCGGGCUucgucuccUuccucaccaaucccuUCGGGACCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGGc-------A---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 3512 0.68 0.952245
Target:  5'- -cGUCGGCCcuccaccCGAGCCcg-CGGGGCCc -3'
miRNA:   3'- gcUAGCUGGa------GUUCGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 63356 0.68 0.952245
Target:  5'- gGAUCGucuucguCCUCAccgucgggGGCCGaUCcGGACCg -3'
miRNA:   3'- gCUAGCu------GGAGU--------UCGGCaAGcCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.