miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 203974 0.68 0.952246
Target:  5'- -cAUCGACCUCAuGGaCCGgaUCcGGACCg -3'
miRNA:   3'- gcUAGCUGGAGU-UC-GGCa-AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 114171 0.68 0.952246
Target:  5'- cCGGUCcuCCUCGGuggcGCCGgcgUCGGGcCCg -3'
miRNA:   3'- -GCUAGcuGGAGUU----CGGCa--AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 88150 0.68 0.952246
Target:  5'- aCGAUCcGCCcguGGCCGUcgugCGGGAaCCg -3'
miRNA:   3'- -GCUAGcUGGaguUCGGCAa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 123331 0.68 0.955305
Target:  5'- -cGUCGACUUCGGGCCGcuggagcccccgUCcaagguccGGGGCCg -3'
miRNA:   3'- gcUAGCUGGAGUUCGGCa-----------AG--------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 187781 0.68 0.956048
Target:  5'- uCGAUUGGCCUCGAuaCGUaccaCGGGAa- -3'
miRNA:   3'- -GCUAGCUGGAGUUcgGCAa---GCCCUgg -5'
9193 3' -54.3 NC_002512.2 + 96710 0.68 0.956048
Target:  5'- uCGAcuauUUGACCcccgCGGGCCGgcccgCGGGAaCCg -3'
miRNA:   3'- -GCU----AGCUGGa---GUUCGGCaa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 119307 0.68 0.956048
Target:  5'- aGAUCGACgUCAAGCUc-UCGGucaucucgauGGCCg -3'
miRNA:   3'- gCUAGCUGgAGUUCGGcaAGCC----------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 216047 0.68 0.956048
Target:  5'- gCGAgugCGAC----GGgCGUUCGGGGCCg -3'
miRNA:   3'- -GCUa--GCUGgaguUCgGCAAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 227998 0.68 0.956048
Target:  5'- cCGAg-GGCCg-GAGCCGgaCGGGACg -3'
miRNA:   3'- -GCUagCUGGagUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 16180 0.68 0.956048
Target:  5'- ---cCGACgUCGaagaAGCCaGUUCGaGGACCg -3'
miRNA:   3'- gcuaGCUGgAGU----UCGG-CAAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 129492 0.68 0.95964
Target:  5'- aGA-CGACgCUCuccgcGGCCGggaagUCGGGAgCCg -3'
miRNA:   3'- gCUaGCUG-GAGu----UCGGCa----AGCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 86969 0.68 0.95964
Target:  5'- uCGGUCGACgaagcGGCCGUgaugUGGGACg -3'
miRNA:   3'- -GCUAGCUGgagu-UCGGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 112952 0.68 0.95964
Target:  5'- cCGGUCGAgCCcCGAGUCG-UCGGGcgucacgaacGCCu -3'
miRNA:   3'- -GCUAGCU-GGaGUUCGGCaAGCCC----------UGG- -5'
9193 3' -54.3 NC_002512.2 + 154516 0.68 0.95964
Target:  5'- uCGggCGAUgaCUCAgccGGCgGUUCGGG-CCg -3'
miRNA:   3'- -GCuaGCUG--GAGU---UCGgCAAGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 226195 0.68 0.95964
Target:  5'- gGGUCGACCUCc-GUCGgggaCGGGAggaCCu -3'
miRNA:   3'- gCUAGCUGGAGuuCGGCaa--GCCCU---GG- -5'
9193 3' -54.3 NC_002512.2 + 200698 0.68 0.963024
Target:  5'- uCGGUCG-UCUCGGGUgGcgUCGGGcuGCCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGgCa-AGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 117107 0.68 0.963024
Target:  5'- gGGUCaucaACCUCAAGgccaCCGUgucgCGGGACg -3'
miRNA:   3'- gCUAGc---UGGAGUUC----GGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 214132 0.68 0.965896
Target:  5'- aGGUgCGGCCUCAGcGCC-UUCgacggcaucuaccGGGACCc -3'
miRNA:   3'- gCUA-GCUGGAGUU-CGGcAAG-------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 145199 0.68 0.966205
Target:  5'- gGAguUCGACCcCGGGCUG--CGGGACg -3'
miRNA:   3'- gCU--AGCUGGaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 226316 0.68 0.966205
Target:  5'- ----gGGCCUgUggGCCGUggcUCGGGACg -3'
miRNA:   3'- gcuagCUGGA-GuuCGGCA---AGCCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.