Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 145199 | 0.68 | 0.966205 |
Target: 5'- gGAguUCGACCcCGGGCUG--CGGGACg -3' miRNA: 3'- gCU--AGCUGGaGUUCGGCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 62733 | 0.68 | 0.966205 |
Target: 5'- uCGA-CGGCCUCGcggggcacGCCGaccUCGGaGACCa -3' miRNA: 3'- -GCUaGCUGGAGUu-------CGGCa--AGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 226316 | 0.68 | 0.966205 |
Target: 5'- ----gGGCCUgUggGCCGUggcUCGGGACg -3' miRNA: 3'- gcuagCUGGA-GuuCGGCA---AGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 120731 | 0.68 | 0.966205 |
Target: 5'- gCGAUCcgucACCUCAgcAGCCGggCGGcGAguCCg -3' miRNA: 3'- -GCUAGc---UGGAGU--UCGGCaaGCC-CU--GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 102063 | 0.68 | 0.966205 |
Target: 5'- cCGA-CGACCUC---CCGgagcCGGGACCc -3' miRNA: 3'- -GCUaGCUGGAGuucGGCaa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 107011 | 0.68 | 0.967422 |
Target: 5'- gGGUCGGCCgaGAGCCGggcgCgcucccgacggaagaGGGACCc -3' miRNA: 3'- gCUAGCUGGagUUCGGCaa--G---------------CCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 218206 | 0.67 | 0.968899 |
Target: 5'- --cUCGggcccccGCCUCGGGCCGcggCGGG-CCg -3' miRNA: 3'- gcuAGC-------UGGAGUUCGGCaa-GCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 118537 | 0.67 | 0.969188 |
Target: 5'- gGGUCGuCCUCGuGCgCGccCGGGACg -3' miRNA: 3'- gCUAGCuGGAGUuCG-GCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 127467 | 0.67 | 0.969188 |
Target: 5'- aGGUCGGgCagAAGCgGUUCGuGGCCg -3' miRNA: 3'- gCUAGCUgGagUUCGgCAAGCcCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 196425 | 0.67 | 0.969189 |
Target: 5'- gCGG-CGGCCg--GGUCGggagaggUCGGGGCCa -3' miRNA: 3'- -GCUaGCUGGaguUCGGCa------AGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 149114 | 0.67 | 0.969189 |
Target: 5'- cCGcUCcuCCUCGAGCCGcgaggaccccCGGGACCc -3' miRNA: 3'- -GCuAGcuGGAGUUCGGCaa--------GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 96213 | 0.67 | 0.971979 |
Target: 5'- aGGUCGGCCaCGgcGGCCGcggcggcggCGGcGACCg -3' miRNA: 3'- gCUAGCUGGaGU--UCGGCaa-------GCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 140538 | 0.67 | 0.971979 |
Target: 5'- aCGGcCG-CCUCGAcGCCGUUCuGGuCCu -3' miRNA: 3'- -GCUaGCuGGAGUU-CGGCAAGcCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 197783 | 0.67 | 0.971979 |
Target: 5'- cCGAccUCGACCgcgaggacaccCGGGCCGccaUCGGcGACCc -3' miRNA: 3'- -GCU--AGCUGGa----------GUUCGGCa--AGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 122030 | 0.67 | 0.971979 |
Target: 5'- gGAUCGGCgCUCGcGCaCGccCGGGGCg -3' miRNA: 3'- gCUAGCUG-GAGUuCG-GCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 71738 | 0.67 | 0.971979 |
Target: 5'- gGAUgGugCUCAGGuaGUcgCGGaGGCCg -3' miRNA: 3'- gCUAgCugGAGUUCggCAa-GCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 95099 | 0.67 | 0.974583 |
Target: 5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3' miRNA: 3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 188283 | 0.67 | 0.974583 |
Target: 5'- aGGUCGAgUUCAcGGCCGgcaacCGGGugGCCu -3' miRNA: 3'- gCUAGCUgGAGU-UCGGCaa---GCCC--UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 87677 | 0.67 | 0.974583 |
Target: 5'- gCGA-CGACgUCGAGaCCGa-CGGGACg -3' miRNA: 3'- -GCUaGCUGgAGUUC-GGCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 169620 | 0.67 | 0.974583 |
Target: 5'- aGGUCGGCCggCAGGUCcaggugUCGGGuCUg -3' miRNA: 3'- gCUAGCUGGa-GUUCGGca----AGCCCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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