Results 121 - 140 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 188283 | 0.67 | 0.974583 |
Target: 5'- aGGUCGAgUUCAcGGCCGgcaacCGGGugGCCu -3' miRNA: 3'- gCUAGCUgGAGU-UCGGCaa---GCCC--UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 98828 | 0.67 | 0.974583 |
Target: 5'- gGAUCGGCCUCcGGCg---CGGcGCCg -3' miRNA: 3'- gCUAGCUGGAGuUCGgcaaGCCcUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 169620 | 0.67 | 0.974583 |
Target: 5'- aGGUCGGCCggCAGGUCcaggugUCGGGuCUg -3' miRNA: 3'- gCUAGCUGGa-GUUCGGca----AGCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 123164 | 0.67 | 0.974583 |
Target: 5'- gCGAUCGccGCCgaggCcgAGGCCGaggCGGGACg -3' miRNA: 3'- -GCUAGC--UGGa---G--UUCGGCaa-GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 220485 | 0.67 | 0.976058 |
Target: 5'- -cGUCcGCCUCAcccgcagcgaGGCCGUggccugcgucgccCGGGACCu -3' miRNA: 3'- gcUAGcUGGAGU----------UCGGCAa------------GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 44458 | 0.67 | 0.976772 |
Target: 5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3' miRNA: 3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 224087 | 0.67 | 0.976772 |
Target: 5'- aCGGagGACCUCAGGgggaCCGUgUCGGucgugguGACCa -3' miRNA: 3'- -GCUagCUGGAGUUC----GGCA-AGCC-------CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 109281 | 0.67 | 0.977006 |
Target: 5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3' miRNA: 3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 55662 | 0.67 | 0.977006 |
Target: 5'- gGA-CGA-CUCGAcGCCGggCGGGGCg -3' miRNA: 3'- gCUaGCUgGAGUU-CGGCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 88979 | 0.67 | 0.977006 |
Target: 5'- gGGUcucCGGCUUCGuGGCCGg--GGGGCCg -3' miRNA: 3'- gCUA---GCUGGAGU-UCGGCaagCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 82361 | 0.67 | 0.977006 |
Target: 5'- --uUCGcGCCUCGcGCCGggaucggCGGGACg -3' miRNA: 3'- gcuAGC-UGGAGUuCGGCaa-----GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 190207 | 0.67 | 0.977006 |
Target: 5'- aGGUCGGCggCGcGGUCGUcCGGGACg -3' miRNA: 3'- gCUAGCUGgaGU-UCGGCAaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 126861 | 0.67 | 0.977006 |
Target: 5'- -cGUCGuCCUCuucCCGUcCGGGACUg -3' miRNA: 3'- gcUAGCuGGAGuucGGCAaGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 135328 | 0.67 | 0.977006 |
Target: 5'- aGGUCGGCgUC-AGCCGcgCcgGGGugCu -3' miRNA: 3'- gCUAGCUGgAGuUCGGCaaG--CCCugG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 124239 | 0.67 | 0.977006 |
Target: 5'- gCGGcUCGcccuACCUC-GGCCGggucUCGGaGACCg -3' miRNA: 3'- -GCU-AGC----UGGAGuUCGGCa---AGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 98262 | 0.67 | 0.977006 |
Target: 5'- cCGAgagCGuCUUCGuGGCCGggCGGG-CCg -3' miRNA: 3'- -GCUa--GCuGGAGU-UCGGCaaGCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 148979 | 0.67 | 0.978598 |
Target: 5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3' miRNA: 3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 99966 | 0.67 | 0.979255 |
Target: 5'- uGAUCGGCCU--GGCCccgCGGuGGCUg -3' miRNA: 3'- gCUAGCUGGAguUCGGcaaGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 35027 | 0.67 | 0.979255 |
Target: 5'- gGAaCGGCUg-AGGCCGaUCGGGGuCCg -3' miRNA: 3'- gCUaGCUGGagUUCGGCaAGCCCU-GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 102748 | 0.67 | 0.979255 |
Target: 5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3' miRNA: 3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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