miRNA display CGI


Results 141 - 160 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 99966 0.67 0.979255
Target:  5'- uGAUCGGCCU--GGCCccgCGGuGGCUg -3'
miRNA:   3'- gCUAGCUGGAguUCGGcaaGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 102748 0.67 0.979255
Target:  5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3'
miRNA:   3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 149965 0.67 0.981336
Target:  5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3'
miRNA:   3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 75071 0.67 0.981336
Target:  5'- cCGGgcggCGACgUCGAggcGCCGUUuCGGGGgCu -3'
miRNA:   3'- -GCUa---GCUGgAGUU---CGGCAA-GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 193640 0.67 0.981336
Target:  5'- aGAUUGAgCaaUCGcuacucGCCGUcguccUCGGGACCg -3'
miRNA:   3'- gCUAGCUgG--AGUu-----CGGCA-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 228144 0.67 0.981336
Target:  5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 21450 0.66 0.983257
Target:  5'- cCGAcUCGAUCggGGGCCGgcgcCGGGAgCg -3'
miRNA:   3'- -GCU-AGCUGGagUUCGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 71583 0.66 0.983257
Target:  5'- cCGGaCGACCgc-GGCC-UUgGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGaguUCGGcAAgCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 136648 0.66 0.983257
Target:  5'- cCGcUgGACCguUCAGGCCGUgacgaGGGAgCg -3'
miRNA:   3'- -GCuAgCUGG--AGUUCGGCAag---CCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 160432 0.66 0.983257
Target:  5'- gCGGUCGAggacauCUUCAgccugggcgaaGGCCGUuucgCGGGGCa -3'
miRNA:   3'- -GCUAGCU------GGAGU-----------UCGGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 224059 0.66 0.983257
Target:  5'- aCGGUgCGACCauuUCGAcgccGCCGaaCGGGGCg -3'
miRNA:   3'- -GCUA-GCUGG---AGUU----CGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 193435 0.66 0.983257
Target:  5'- aCGAgcgCGACCgCGGccGCCGguggCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUGGaGUU--CGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 39386 0.66 0.983257
Target:  5'- aCGAUCGAa---GAGCCG-UCGGaACCu -3'
miRNA:   3'- -GCUAGCUggagUUCGGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 220798 0.66 0.983257
Target:  5'- gGAUCGuCCUCGAcCCGcUCGuGGuCCc -3'
miRNA:   3'- gCUAGCuGGAGUUcGGCaAGC-CCuGG- -5'
9193 3' -54.3 NC_002512.2 + 188418 0.66 0.983257
Target:  5'- uGAcCGACCaCGAGaCCGUcgucuacgUCGGGAgCa -3'
miRNA:   3'- gCUaGCUGGaGUUC-GGCA--------AGCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 182434 0.66 0.983257
Target:  5'- gGAacUCGGCCUCGGccuccGCCGUgCGGG-Cg -3'
miRNA:   3'- gCU--AGCUGGAGUU-----CGGCAaGCCCuGg -5'
9193 3' -54.3 NC_002512.2 + 137285 0.66 0.983257
Target:  5'- uCGucgCGACC---GGCC--UCGGGACCg -3'
miRNA:   3'- -GCua-GCUGGaguUCGGcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 220342 0.66 0.983982
Target:  5'- cCGGaCGGCCUCGucaacgccguGGCCGUggCcgccgccgccgugcuGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU----------UCGGCAa-G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 85577 0.66 0.984855
Target:  5'- gCGGgagCGGCCgggaGAGCgcguccgCGUUCGGGugCc -3'
miRNA:   3'- -GCUa--GCUGGag--UUCG-------GCAAGCCCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.