Results 41 - 60 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 71583 | 0.66 | 0.983257 |
Target: 5'- cCGGaCGACCgc-GGCC-UUgGGGGCCg -3' miRNA: 3'- -GCUaGCUGGaguUCGGcAAgCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 160432 | 0.66 | 0.983257 |
Target: 5'- gCGGUCGAggacauCUUCAgccugggcgaaGGCCGUuucgCGGGGCa -3' miRNA: 3'- -GCUAGCU------GGAGU-----------UCGGCAa---GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 193435 | 0.66 | 0.983257 |
Target: 5'- aCGAgcgCGACCgCGGccGCCGguggCGGGAgCg -3' miRNA: 3'- -GCUa--GCUGGaGUU--CGGCaa--GCCCUgG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 188418 | 0.66 | 0.983257 |
Target: 5'- uGAcCGACCaCGAGaCCGUcgucuacgUCGGGAgCa -3' miRNA: 3'- gCUaGCUGGaGUUC-GGCA--------AGCCCUgG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 136648 | 0.66 | 0.983257 |
Target: 5'- cCGcUgGACCguUCAGGCCGUgacgaGGGAgCg -3' miRNA: 3'- -GCuAgCUGG--AGUUCGGCAag---CCCUgG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 39386 | 0.66 | 0.983257 |
Target: 5'- aCGAUCGAa---GAGCCG-UCGGaACCu -3' miRNA: 3'- -GCUAGCUggagUUCGGCaAGCCcUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 220798 | 0.66 | 0.983257 |
Target: 5'- gGAUCGuCCUCGAcCCGcUCGuGGuCCc -3' miRNA: 3'- gCUAGCuGGAGUUcGGCaAGC-CCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 182434 | 0.66 | 0.983257 |
Target: 5'- gGAacUCGGCCUCGGccuccGCCGUgCGGG-Cg -3' miRNA: 3'- gCU--AGCUGGAGUU-----CGGCAaGCCCuGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 193640 | 0.67 | 0.981336 |
Target: 5'- aGAUUGAgCaaUCGcuacucGCCGUcguccUCGGGACCg -3' miRNA: 3'- gCUAGCUgG--AGUu-----CGGCA-----AGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 228144 | 0.67 | 0.981336 |
Target: 5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3' miRNA: 3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 149965 | 0.67 | 0.981336 |
Target: 5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3' miRNA: 3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 75071 | 0.67 | 0.981336 |
Target: 5'- cCGGgcggCGACgUCGAggcGCCGUUuCGGGGgCu -3' miRNA: 3'- -GCUa---GCUGgAGUU---CGGCAA-GCCCUgG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 77823 | 0.67 | 0.981336 |
Target: 5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3' miRNA: 3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 102748 | 0.67 | 0.979255 |
Target: 5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3' miRNA: 3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 133688 | 0.67 | 0.979255 |
Target: 5'- uGGcCGACCUCGcGGCCGccUCccGGACCa -3' miRNA: 3'- gCUaGCUGGAGU-UCGGCa-AGc-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 35027 | 0.67 | 0.979255 |
Target: 5'- gGAaCGGCUg-AGGCCGaUCGGGGuCCg -3' miRNA: 3'- gCUaGCUGGagUUCGGCaAGCCCU-GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 191574 | 0.67 | 0.979255 |
Target: 5'- cCGGUCacgGAgUUCAGGCCacuGUUCugcGGGACCc -3' miRNA: 3'- -GCUAG---CUgGAGUUCGG---CAAG---CCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 99966 | 0.67 | 0.979255 |
Target: 5'- uGAUCGGCCU--GGCCccgCGGuGGCUg -3' miRNA: 3'- gCUAGCUGGAguUCGGcaaGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 148979 | 0.67 | 0.978598 |
Target: 5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3' miRNA: 3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 109281 | 0.67 | 0.977006 |
Target: 5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3' miRNA: 3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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