miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 82361 0.67 0.977006
Target:  5'- --uUCGcGCCUCGcGCCGggaucggCGGGACg -3'
miRNA:   3'- gcuAGC-UGGAGUuCGGCaa-----GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 190207 0.67 0.977006
Target:  5'- aGGUCGGCggCGcGGUCGUcCGGGACg -3'
miRNA:   3'- gCUAGCUGgaGU-UCGGCAaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 135328 0.67 0.977006
Target:  5'- aGGUCGGCgUC-AGCCGcgCcgGGGugCu -3'
miRNA:   3'- gCUAGCUGgAGuUCGGCaaG--CCCugG- -5'
9193 3' -54.3 NC_002512.2 + 124239 0.67 0.977006
Target:  5'- gCGGcUCGcccuACCUC-GGCCGggucUCGGaGACCg -3'
miRNA:   3'- -GCU-AGC----UGGAGuUCGGCa---AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 98262 0.67 0.977006
Target:  5'- cCGAgagCGuCUUCGuGGCCGggCGGG-CCg -3'
miRNA:   3'- -GCUa--GCuGGAGU-UCGGCaaGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 126861 0.67 0.977006
Target:  5'- -cGUCGuCCUCuucCCGUcCGGGACUg -3'
miRNA:   3'- gcUAGCuGGAGuucGGCAaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 88979 0.67 0.977006
Target:  5'- gGGUcucCGGCUUCGuGGCCGg--GGGGCCg -3'
miRNA:   3'- gCUA---GCUGGAGU-UCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 109281 0.67 0.977006
Target:  5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3'
miRNA:   3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 224087 0.67 0.976772
Target:  5'- aCGGagGACCUCAGGgggaCCGUgUCGGucgugguGACCa -3'
miRNA:   3'- -GCUagCUGGAGUUC----GGCA-AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 44458 0.67 0.976772
Target:  5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 220485 0.67 0.976058
Target:  5'- -cGUCcGCCUCAcccgcagcgaGGCCGUggccugcgucgccCGGGACCu -3'
miRNA:   3'- gcUAGcUGGAGU----------UCGGCAa------------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 98828 0.67 0.974583
Target:  5'- gGAUCGGCCUCcGGCg---CGGcGCCg -3'
miRNA:   3'- gCUAGCUGGAGuUCGgcaaGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 169620 0.67 0.974583
Target:  5'- aGGUCGGCCggCAGGUCcaggugUCGGGuCUg -3'
miRNA:   3'- gCUAGCUGGa-GUUCGGca----AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 54356 0.67 0.974583
Target:  5'- uCGAUCGcggccacCCUcCAGGCC-UUCuGGACCg -3'
miRNA:   3'- -GCUAGCu------GGA-GUUCGGcAAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 5269 0.67 0.974583
Target:  5'- gCGG-CGACCcCGAGCCcggUCGGcACCg -3'
miRNA:   3'- -GCUaGCUGGaGUUCGGca-AGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 123164 0.67 0.974583
Target:  5'- gCGAUCGccGCCgaggCcgAGGCCGaggCGGGACg -3'
miRNA:   3'- -GCUAGC--UGGa---G--UUCGGCaa-GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 87677 0.67 0.974583
Target:  5'- gCGA-CGACgUCGAGaCCGa-CGGGACg -3'
miRNA:   3'- -GCUaGCUGgAGUUC-GGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 95099 0.67 0.974583
Target:  5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3'
miRNA:   3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 188283 0.67 0.974583
Target:  5'- aGGUCGAgUUCAcGGCCGgcaacCGGGugGCCu -3'
miRNA:   3'- gCUAGCUgGAGU-UCGGCaa---GCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 140538 0.67 0.971979
Target:  5'- aCGGcCG-CCUCGAcGCCGUUCuGGuCCu -3'
miRNA:   3'- -GCUaGCuGGAGUU-CGGCAAGcCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.