miRNA display CGI


Results 81 - 100 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 96213 0.67 0.971979
Target:  5'- aGGUCGGCCaCGgcGGCCGcggcggcggCGGcGACCg -3'
miRNA:   3'- gCUAGCUGGaGU--UCGGCaa-------GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 140538 0.67 0.971979
Target:  5'- aCGGcCG-CCUCGAcGCCGUUCuGGuCCu -3'
miRNA:   3'- -GCUaGCuGGAGUU-CGGCAAGcCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 197783 0.67 0.971979
Target:  5'- cCGAccUCGACCgcgaggacaccCGGGCCGccaUCGGcGACCc -3'
miRNA:   3'- -GCU--AGCUGGa----------GUUCGGCa--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 71738 0.67 0.971979
Target:  5'- gGAUgGugCUCAGGuaGUcgCGGaGGCCg -3'
miRNA:   3'- gCUAgCugGAGUUCggCAa-GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 149114 0.67 0.969189
Target:  5'- cCGcUCcuCCUCGAGCCGcgaggaccccCGGGACCc -3'
miRNA:   3'- -GCuAGcuGGAGUUCGGCaa--------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 196425 0.67 0.969189
Target:  5'- gCGG-CGGCCg--GGUCGggagaggUCGGGGCCa -3'
miRNA:   3'- -GCUaGCUGGaguUCGGCa------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 118537 0.67 0.969188
Target:  5'- gGGUCGuCCUCGuGCgCGccCGGGACg -3'
miRNA:   3'- gCUAGCuGGAGUuCG-GCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 127467 0.67 0.969188
Target:  5'- aGGUCGGgCagAAGCgGUUCGuGGCCg -3'
miRNA:   3'- gCUAGCUgGagUUCGgCAAGCcCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218206 0.67 0.968899
Target:  5'- --cUCGggcccccGCCUCGGGCCGcggCGGG-CCg -3'
miRNA:   3'- gcuAGC-------UGGAGUUCGGCaa-GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 107011 0.68 0.967422
Target:  5'- gGGUCGGCCgaGAGCCGggcgCgcucccgacggaagaGGGACCc -3'
miRNA:   3'- gCUAGCUGGagUUCGGCaa--G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 62733 0.68 0.966205
Target:  5'- uCGA-CGGCCUCGcggggcacGCCGaccUCGGaGACCa -3'
miRNA:   3'- -GCUaGCUGGAGUu-------CGGCa--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 120731 0.68 0.966205
Target:  5'- gCGAUCcgucACCUCAgcAGCCGggCGGcGAguCCg -3'
miRNA:   3'- -GCUAGc---UGGAGU--UCGGCaaGCC-CU--GG- -5'
9193 3' -54.3 NC_002512.2 + 145199 0.68 0.966205
Target:  5'- gGAguUCGACCcCGGGCUG--CGGGACg -3'
miRNA:   3'- gCU--AGCUGGaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 226316 0.68 0.966205
Target:  5'- ----gGGCCUgUggGCCGUggcUCGGGACg -3'
miRNA:   3'- gcuagCUGGA-GuuCGGCA---AGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 19375 0.68 0.966205
Target:  5'- uCGG-CGGCCUCGcGCuCGcgUCGGGcCCu -3'
miRNA:   3'- -GCUaGCUGGAGUuCG-GCa-AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 102063 0.68 0.966205
Target:  5'- cCGA-CGACCUC---CCGgagcCGGGACCc -3'
miRNA:   3'- -GCUaGCUGGAGuucGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 79178 0.68 0.966205
Target:  5'- aCGGUCGGCCgcCGAGagccaacgguCCGUcggCGGcGACCg -3'
miRNA:   3'- -GCUAGCUGGa-GUUC----------GGCAa--GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 214132 0.68 0.965896
Target:  5'- aGGUgCGGCCUCAGcGCC-UUCgacggcaucuaccGGGACCc -3'
miRNA:   3'- gCUA-GCUGGAGUU-CGGcAAG-------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 200698 0.68 0.963024
Target:  5'- uCGGUCG-UCUCGGGUgGcgUCGGGcuGCCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGgCa-AGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 117107 0.68 0.963024
Target:  5'- gGGUCaucaACCUCAAGgccaCCGUgucgCGGGACg -3'
miRNA:   3'- gCUAGc---UGGAGUUC----GGCAa---GCCCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.