miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 94651 0.8 0.419118
Target:  5'- aCGA-CGGCCUCGAGgCGgccCGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGUUCgGCaa-GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 95099 0.67 0.974583
Target:  5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3'
miRNA:   3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 95552 0.66 0.989483
Target:  5'- gGAgcUCGGCCgcggCGAGuCCG-UCGGcGCCg -3'
miRNA:   3'- gCU--AGCUGGa---GUUC-GGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 96213 0.67 0.971979
Target:  5'- aGGUCGGCCaCGgcGGCCGcggcggcggCGGcGACCg -3'
miRNA:   3'- gCUAGCUGGaGU--UCGGCaa-------GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 96710 0.68 0.956048
Target:  5'- uCGAcuauUUGACCcccgCGGGCCGgcccgCGGGAaCCg -3'
miRNA:   3'- -GCU----AGCUGGa---GUUCGGCaa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 97202 0.7 0.908122
Target:  5'- cCGucugCGGCggCGGGCCGggCGGGACg -3'
miRNA:   3'- -GCua--GCUGgaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 98262 0.67 0.977006
Target:  5'- cCGAgagCGuCUUCGuGGCCGggCGGG-CCg -3'
miRNA:   3'- -GCUa--GCuGGAGU-UCGGCaaGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 98828 0.67 0.974583
Target:  5'- gGAUCGGCCUCcGGCg---CGGcGCCg -3'
miRNA:   3'- gCUAGCUGGAGuUCGgcaaGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 98941 0.7 0.913915
Target:  5'- gCGGUCGuccGCCUCGAGCUcagUCGGuGuCCg -3'
miRNA:   3'- -GCUAGC---UGGAGUUCGGca-AGCC-CuGG- -5'
9193 3' -54.3 NC_002512.2 + 99709 0.66 0.989483
Target:  5'- --cUCGuCCUCGuccgcGCCG-UCGcGGGCCg -3'
miRNA:   3'- gcuAGCuGGAGUu----CGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 99790 0.69 0.934859
Target:  5'- --cUCGACCgcggCAcaaaacgcucAGCCaguUUCGGGACCg -3'
miRNA:   3'- gcuAGCUGGa---GU----------UCGGc--AAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 99966 0.67 0.979255
Target:  5'- uGAUCGGCCU--GGCCccgCGGuGGCUg -3'
miRNA:   3'- gCUAGCUGGAguUCGGcaaGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 100176 0.69 0.934859
Target:  5'- gGAUCGAcaaccccgguuaCCUCGAGUCGgacggcgaUUCGGGcuacGCCg -3'
miRNA:   3'- gCUAGCU------------GGAGUUCGGC--------AAGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 102063 0.68 0.966205
Target:  5'- cCGA-CGACCUC---CCGgagcCGGGACCc -3'
miRNA:   3'- -GCUaGCUGGAGuucGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102114 0.69 0.943992
Target:  5'- ---gCGGCCUC-GGCCGUcggaggGGGACCc -3'
miRNA:   3'- gcuaGCUGGAGuUCGGCAag----CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102748 0.67 0.979255
Target:  5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3'
miRNA:   3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 102947 0.7 0.919486
Target:  5'- gGGUCGACCg-GGGCgCGggCGGGuaucGCCa -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCaaGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 103362 0.69 0.939537
Target:  5'- aCGGUCGAggUCAGGCCGc-CGGaGCCg -3'
miRNA:   3'- -GCUAGCUggAGUUCGGCaaGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 103635 0.69 0.943557
Target:  5'- aGGUCGGCUUCGgacacccGGCCcuccUCGGcGGCCa -3'
miRNA:   3'- gCUAGCUGGAGU-------UCGGca--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 107011 0.68 0.967422
Target:  5'- gGGUCGGCCgaGAGCCGggcgCgcucccgacggaagaGGGACCc -3'
miRNA:   3'- gCUAGCUGGagUUCGGCaa--G---------------CCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.