miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 107067 0.66 0.98813
Target:  5'- cCGGUCGACgCgcuGGaCGUagGGGACCc -3'
miRNA:   3'- -GCUAGCUG-GaguUCgGCAagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 109281 0.67 0.977006
Target:  5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3'
miRNA:   3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 109816 0.66 0.985025
Target:  5'- -cAUCGACCccgcguucacgUCGAaccGCCGggcgUCGgGGACCg -3'
miRNA:   3'- gcUAGCUGG-----------AGUU---CGGCa---AGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 111379 0.69 0.938157
Target:  5'- uCGAggaaGACCUCGuAGCCGUcccgccccggcagcUCGGcGCCg -3'
miRNA:   3'- -GCUag--CUGGAGU-UCGGCA--------------AGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 111905 0.77 0.585973
Target:  5'- aCGAgCGGCCgcgCGGGuuGUUCGGGugCc -3'
miRNA:   3'- -GCUaGCUGGa--GUUCggCAAGCCCugG- -5'
9193 3' -54.3 NC_002512.2 + 112154 0.66 0.989483
Target:  5'- gCGGUCGACggCGAGCCGgcgcUCGaGcCCg -3'
miRNA:   3'- -GCUAGCUGgaGUUCGGCa---AGCcCuGG- -5'
9193 3' -54.3 NC_002512.2 + 112952 0.68 0.95964
Target:  5'- cCGGUCGAgCCcCGAGUCG-UCGGGcgucacgaacGCCu -3'
miRNA:   3'- -GCUAGCU-GGaGUUCGGCaAGCCC----------UGG- -5'
9193 3' -54.3 NC_002512.2 + 113156 0.76 0.635366
Target:  5'- ---cCGGCCUCGccgcGGCCGggCGGGACg -3'
miRNA:   3'- gcuaGCUGGAGU----UCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 114171 0.68 0.952246
Target:  5'- cCGGUCcuCCUCGGuggcGCCGgcgUCGGGcCCg -3'
miRNA:   3'- -GCUAGcuGGAGUU----CGGCa--AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 114525 0.7 0.895876
Target:  5'- cCGGUCGACCugcugacgcacaUCAAGCUGagCGuGGGCg -3'
miRNA:   3'- -GCUAGCUGG------------AGUUCGGCaaGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 115664 0.69 0.934859
Target:  5'- cCGAUCGGCCUgCAcgugGGCuCGggCcGGGCCu -3'
miRNA:   3'- -GCUAGCUGGA-GU----UCG-GCaaGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 115744 0.66 0.986647
Target:  5'- gGGUCGuCCUCugccGGCUGcUCcuGGACCg -3'
miRNA:   3'- gCUAGCuGGAGu---UCGGCaAGc-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 116159 0.69 0.943992
Target:  5'- --cUCGGCCcgCAGaucGCCGcccgcgUCGGGACCc -3'
miRNA:   3'- gcuAGCUGGa-GUU---CGGCa-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 116752 0.66 0.986647
Target:  5'- gCGAUgGACCaggcCAGccGCUGUUCGuGGACg -3'
miRNA:   3'- -GCUAgCUGGa---GUU--CGGCAAGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 117029 0.78 0.508843
Target:  5'- gGAcgCGGCCaUCGAGCUGUUCGGGcugcuGCCg -3'
miRNA:   3'- gCUa-GCUGG-AGUUCGGCAAGCCC-----UGG- -5'
9193 3' -54.3 NC_002512.2 + 117107 0.68 0.963024
Target:  5'- gGGUCaucaACCUCAAGgccaCCGUgucgCGGGACg -3'
miRNA:   3'- gCUAGc---UGGAGUUC----GGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 117951 0.7 0.919487
Target:  5'- uGAgcgcCGACCUgGAGCUGUUCcGGcACCc -3'
miRNA:   3'- gCUa---GCUGGAgUUCGGCAAGcCC-UGG- -5'
9193 3' -54.3 NC_002512.2 + 118537 0.67 0.969188
Target:  5'- gGGUCGuCCUCGuGCgCGccCGGGACg -3'
miRNA:   3'- gCUAGCuGGAGUuCG-GCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 119307 0.68 0.956048
Target:  5'- aGAUCGACgUCAAGCUc-UCGGucaucucgauGGCCg -3'
miRNA:   3'- gCUAGCUGgAGUUCGGcaAGCC----------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 120731 0.68 0.966205
Target:  5'- gCGAUCcgucACCUCAgcAGCCGggCGGcGAguCCg -3'
miRNA:   3'- -GCUAGc---UGGAGU--UCGGCaaGCC-CU--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.