Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 121333 | 0.74 | 0.751797 |
Target: 5'- aCGGU-GACCUCGcuCCGgcggCGGGGCCg -3' miRNA: 3'- -GCUAgCUGGAGUucGGCaa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 122030 | 0.67 | 0.971979 |
Target: 5'- gGAUCGGCgCUCGcGCaCGccCGGGGCg -3' miRNA: 3'- gCUAGCUG-GAGUuCG-GCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 123164 | 0.67 | 0.974583 |
Target: 5'- gCGAUCGccGCCgaggCcgAGGCCGaggCGGGACg -3' miRNA: 3'- -GCUAGC--UGGa---G--UUCGGCaa-GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 123331 | 0.68 | 0.955305 |
Target: 5'- -cGUCGACUUCGGGCCGcuggagcccccgUCcaagguccGGGGCCg -3' miRNA: 3'- gcUAGCUGGAGUUCGGCa-----------AG--------CCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 124239 | 0.67 | 0.977006 |
Target: 5'- gCGGcUCGcccuACCUC-GGCCGggucUCGGaGACCg -3' miRNA: 3'- -GCU-AGC----UGGAGuUCGGCa---AGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 124297 | 0.76 | 0.635366 |
Target: 5'- gCGGcUCGACCgcgCgGAGCUGaUCGGGGCCg -3' miRNA: 3'- -GCU-AGCUGGa--G-UUCGGCaAGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 124662 | 0.69 | 0.939537 |
Target: 5'- uGAUCGucacCCUCAccGCCagaCGGGACCu -3' miRNA: 3'- gCUAGCu---GGAGUu-CGGcaaGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 124740 | 0.66 | 0.986491 |
Target: 5'- cCGAcUCGGCCUguucgugGAGCCGUcgUCGGcccagacGACCg -3' miRNA: 3'- -GCU-AGCUGGAg------UUCGGCA--AGCC-------CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 124828 | 0.66 | 0.986647 |
Target: 5'- --uUCGGCUgCGuGCCGgacacCGGGACCu -3' miRNA: 3'- gcuAGCUGGaGUuCGGCaa---GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 126263 | 0.66 | 0.98813 |
Target: 5'- cCGAagcCGACCUCcAGCgGUacCGGGagGCCg -3' miRNA: 3'- -GCUa--GCUGGAGuUCGgCAa-GCCC--UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 126861 | 0.67 | 0.977006 |
Target: 5'- -cGUCGuCCUCuucCCGUcCGGGACUg -3' miRNA: 3'- gcUAGCuGGAGuucGGCAaGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 127385 | 0.66 | 0.989482 |
Target: 5'- --cUCGuCCUCcccguccGCCGccugCGGGACCg -3' miRNA: 3'- gcuAGCuGGAGuu-----CGGCaa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 127467 | 0.67 | 0.969188 |
Target: 5'- aGGUCGGgCagAAGCgGUUCGuGGCCg -3' miRNA: 3'- gCUAGCUgGagUUCGgCAAGCcCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 127646 | 0.69 | 0.943992 |
Target: 5'- gGAUCGGguCgCUCGgacGGCCGgUCGaGGGCCg -3' miRNA: 3'- gCUAGCU--G-GAGU---UCGGCaAGC-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 127912 | 0.72 | 0.82242 |
Target: 5'- gGAUCGGCCaCGAGCCcgccggCGGGcCCg -3' miRNA: 3'- gCUAGCUGGaGUUCGGcaa---GCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 128185 | 0.78 | 0.527782 |
Target: 5'- aGGUCG-CCgagCGGGCCGccggCGGGACCg -3' miRNA: 3'- gCUAGCuGGa--GUUCGGCaa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 129492 | 0.68 | 0.95964 |
Target: 5'- aGA-CGACgCUCuccgcGGCCGggaagUCGGGAgCCg -3' miRNA: 3'- gCUaGCUG-GAGu----UCGGCa----AGCCCU-GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 133688 | 0.67 | 0.979255 |
Target: 5'- uGGcCGACCUCGcGGCCGccUCccGGACCa -3' miRNA: 3'- gCUaGCUGGAGU-UCGGCa-AGc-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 134299 | 0.71 | 0.86156 |
Target: 5'- gGAUCGuCUUCGAGgaCGUcgcCGGGGCCg -3' miRNA: 3'- gCUAGCuGGAGUUCg-GCAa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 134858 | 0.66 | 0.989482 |
Target: 5'- cCGcgCGACguCUCGGgcgacGCCGUcgGGGACCu -3' miRNA: 3'- -GCuaGCUG--GAGUU-----CGGCAagCCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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