Results 121 - 140 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 135328 | 0.67 | 0.977006 |
Target: 5'- aGGUCGGCgUC-AGCCGcgCcgGGGugCu -3' miRNA: 3'- gCUAGCUGgAGuUCGGCaaG--CCCugG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 136648 | 0.66 | 0.983257 |
Target: 5'- cCGcUgGACCguUCAGGCCGUgacgaGGGAgCg -3' miRNA: 3'- -GCuAgCUGG--AGUUCGGCAag---CCCUgG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 137285 | 0.66 | 0.983257 |
Target: 5'- uCGucgCGACC---GGCC--UCGGGACCg -3' miRNA: 3'- -GCua-GCUGGaguUCGGcaAGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 137787 | 0.69 | 0.939537 |
Target: 5'- aGGUCGGCgCUCGgcgGGCCGcgcgucCGGcGGCCg -3' miRNA: 3'- gCUAGCUG-GAGU---UCGGCaa----GCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 138028 | 0.76 | 0.645265 |
Target: 5'- gGAUcCGACUUcCGAGCCGacauccugCGGGACCg -3' miRNA: 3'- gCUA-GCUGGA-GUUCGGCaa------GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 140538 | 0.67 | 0.971979 |
Target: 5'- aCGGcCG-CCUCGAcGCCGUUCuGGuCCu -3' miRNA: 3'- -GCUaGCuGGAGUU-CGGCAAGcCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 141857 | 0.66 | 0.986015 |
Target: 5'- aGGUCGGCCaacacggUCcucuggaacgccgcGAGCCGUcucUCGGGuuCCa -3' miRNA: 3'- gCUAGCUGG-------AG--------------UUCGGCA---AGCCCu-GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 143534 | 0.72 | 0.82242 |
Target: 5'- uGG-CGGCCUCGucGCCG-UCGGcGGCCg -3' miRNA: 3'- gCUaGCUGGAGUu-CGGCaAGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 145199 | 0.68 | 0.966205 |
Target: 5'- gGAguUCGACCcCGGGCUG--CGGGACg -3' miRNA: 3'- gCU--AGCUGGaGUUCGGCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 146840 | 0.73 | 0.796941 |
Target: 5'- aGGUCgccuggcccaggGugCUCGAGCuCGcgCGGGGCCa -3' miRNA: 3'- gCUAG------------CugGAGUUCG-GCaaGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 148406 | 0.7 | 0.913915 |
Target: 5'- uGGcCGACCU---GCCGUgccuccugCGGGACCg -3' miRNA: 3'- gCUaGCUGGAguuCGGCAa-------GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 148979 | 0.67 | 0.978598 |
Target: 5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3' miRNA: 3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 149114 | 0.67 | 0.969189 |
Target: 5'- cCGcUCcuCCUCGAGCCGcgaggaccccCGGGACCc -3' miRNA: 3'- -GCuAGcuGGAGUUCGGCaa--------GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 149965 | 0.67 | 0.981336 |
Target: 5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3' miRNA: 3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 154153 | 0.7 | 0.919486 |
Target: 5'- uCGGUCG-CCUC---CCGUUCGGcgGACCg -3' miRNA: 3'- -GCUAGCuGGAGuucGGCAAGCC--CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 154516 | 0.68 | 0.95964 |
Target: 5'- uCGggCGAUgaCUCAgccGGCgGUUCGGG-CCg -3' miRNA: 3'- -GCuaGCUG--GAGU---UCGgCAAGCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 155652 | 0.76 | 0.645265 |
Target: 5'- --uUCGGCgUCcGGCCGUucgccccgcgUCGGGACCg -3' miRNA: 3'- gcuAGCUGgAGuUCGGCA----------AGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 158965 | 0.69 | 0.943992 |
Target: 5'- ---aCGGCggCGAGCgGUUCGGcGGCCa -3' miRNA: 3'- gcuaGCUGgaGUUCGgCAAGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 160432 | 0.66 | 0.983257 |
Target: 5'- gCGGUCGAggacauCUUCAgccugggcgaaGGCCGUuucgCGGGGCa -3' miRNA: 3'- -GCUAGCU------GGAGU-----------UCGGCAa---GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 164195 | 0.73 | 0.788159 |
Target: 5'- uCGA-CGACUUCAugcagGGCC--UCGGGGCCg -3' miRNA: 3'- -GCUaGCUGGAGU-----UCGGcaAGCCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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