miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 214132 0.68 0.965896
Target:  5'- aGGUgCGGCCUCAGcGCC-UUCgacggcaucuaccGGGACCc -3'
miRNA:   3'- gCUA-GCUGGAGUU-CGGcAAG-------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 213506 0.66 0.986647
Target:  5'- -cGUCGACUUCGAGggcgucguCCGggUCGGGguGCCc -3'
miRNA:   3'- gcUAGCUGGAGUUC--------GGCa-AGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 212977 0.75 0.70419
Target:  5'- uCGAgaucugCGACCUCAucgucgccgcGGCCGUcgggccCGGGGCCc -3'
miRNA:   3'- -GCUa-----GCUGGAGU----------UCGGCAa-----GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212494 0.79 0.480992
Target:  5'- aCGAcucCGACCUCGGGCUGgaCGcGGACCa -3'
miRNA:   3'- -GCUa--GCUGGAGUUCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212431 0.73 0.770208
Target:  5'- aGGUCGAgUUCGGGCCGgcCGGccgcGACCg -3'
miRNA:   3'- gCUAGCUgGAGUUCGGCaaGCC----CUGG- -5'
9193 3' -54.3 NC_002512.2 + 211960 0.75 0.703219
Target:  5'- gGGUCGGCUgcuuccgUCAggacgcGGCCGUcguccUCGGGGCCg -3'
miRNA:   3'- gCUAGCUGG-------AGU------UCGGCA-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 209848 0.69 0.924835
Target:  5'- gGAUCGGCuCUUcGGCUGccugCGGGACg -3'
miRNA:   3'- gCUAGCUG-GAGuUCGGCaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 203974 0.68 0.952246
Target:  5'- -cAUCGACCUCAuGGaCCGgaUCcGGACCg -3'
miRNA:   3'- gcUAGCUGGAGU-UC-GGCa-AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 200698 0.68 0.963024
Target:  5'- uCGGUCG-UCUCGGGUgGcgUCGGGcuGCCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGgCa-AGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 197783 0.67 0.971979
Target:  5'- cCGAccUCGACCgcgaggacaccCGGGCCGccaUCGGcGACCc -3'
miRNA:   3'- -GCU--AGCUGGa----------GUUCGGCa--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 197186 0.69 0.939537
Target:  5'- --uUCGuCCUCAuggacCCGcUCGGGGCCg -3'
miRNA:   3'- gcuAGCuGGAGUuc---GGCaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 196425 0.67 0.969189
Target:  5'- gCGG-CGGCCg--GGUCGggagaggUCGGGGCCa -3'
miRNA:   3'- -GCUaGCUGGaguUCGGCa------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 195397 0.69 0.924835
Target:  5'- gGGUCGACCggGAGCuCGUcuucUCgGGGACg -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCA----AG-CCCUGg -5'
9193 3' -54.3 NC_002512.2 + 194862 0.78 0.546978
Target:  5'- cCGAUCGGCCUC-AGCCGUUCccaccuGGCCc -3'
miRNA:   3'- -GCUAGCUGGAGuUCGGCAAGcc----CUGG- -5'
9193 3' -54.3 NC_002512.2 + 193640 0.67 0.981336
Target:  5'- aGAUUGAgCaaUCGcuacucGCCGUcguccUCGGGACCg -3'
miRNA:   3'- gCUAGCUgG--AGUu-----CGGCA-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 193435 0.66 0.983257
Target:  5'- aCGAgcgCGACCgCGGccGCCGguggCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUGGaGUU--CGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 193143 0.72 0.814079
Target:  5'- aCGGUCGuCCUCGuccuGGCCGgcgUCuGGAUCg -3'
miRNA:   3'- -GCUAGCuGGAGU----UCGGCa--AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 191574 0.67 0.979255
Target:  5'- cCGGUCacgGAgUUCAGGCCacuGUUCugcGGGACCc -3'
miRNA:   3'- -GCUAG---CUgGAGUUCGG---CAAG---CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 190207 0.67 0.977006
Target:  5'- aGGUCGGCggCGcGGUCGUcCGGGACg -3'
miRNA:   3'- gCUAGCUGgaGU-UCGGCAaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 190069 0.69 0.948228
Target:  5'- aCGAgcuggccgCGGCCggucagCGGGCuCGgcugCGGGACCu -3'
miRNA:   3'- -GCUa-------GCUGGa-----GUUCG-GCaa--GCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.