miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 190000 0.79 0.471873
Target:  5'- aGGUCGACCUCAaguuGGCCGcggUCGaGGCCg -3'
miRNA:   3'- gCUAGCUGGAGU----UCGGCa--AGCcCUGG- -5'
9193 3' -54.3 NC_002512.2 + 189954 0.71 0.882769
Target:  5'- uCGGUCuucccgGACCUCuucGAGCUG--CGGGACCg -3'
miRNA:   3'- -GCUAG------CUGGAG---UUCGGCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 188418 0.66 0.983257
Target:  5'- uGAcCGACCaCGAGaCCGUcgucuacgUCGGGAgCa -3'
miRNA:   3'- gCUaGCUGGaGUUC-GGCA--------AGCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 188283 0.67 0.974583
Target:  5'- aGGUCGAgUUCAcGGCCGgcaacCGGGugGCCu -3'
miRNA:   3'- gCUAGCUgGAGU-UCGGCaa---GCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 187781 0.68 0.956048
Target:  5'- uCGAUUGGCCUCGAuaCGUaccaCGGGAa- -3'
miRNA:   3'- -GCUAGCUGGAGUUcgGCAa---GCCCUgg -5'
9193 3' -54.3 NC_002512.2 + 187625 0.66 0.989482
Target:  5'- -cAUCGcCCUCuuucGGCCGUcCGcGGAUCg -3'
miRNA:   3'- gcUAGCuGGAGu---UCGGCAaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 186527 0.7 0.919487
Target:  5'- -cGUCGACCUCu-G-CGUgcaCGGGGCCg -3'
miRNA:   3'- gcUAGCUGGAGuuCgGCAa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 182659 0.69 0.945713
Target:  5'- --cUCGGCCUCGccgaacuccuugauGCgGUUCuGGGGCCg -3'
miRNA:   3'- gcuAGCUGGAGUu-------------CGgCAAG-CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 182434 0.66 0.983257
Target:  5'- gGAacUCGGCCUCGGccuccGCCGUgCGGG-Cg -3'
miRNA:   3'- gCU--AGCUGGAGUU-----CGGCAaGCCCuGg -5'
9193 3' -54.3 NC_002512.2 + 179454 0.72 0.846443
Target:  5'- aCGGUCGACgCUCAGuucuuagaaCGUUCGGGgaGCCa -3'
miRNA:   3'- -GCUAGCUG-GAGUUcg-------GCAAGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 178786 0.66 0.98813
Target:  5'- --uUCGACUUCAGcGCCGaccucUUGGcGGCCa -3'
miRNA:   3'- gcuAGCUGGAGUU-CGGCa----AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 173504 0.77 0.560546
Target:  5'- --cUCGACCUCGccccGCCGUccgccgauccguccgUCGGGGCCg -3'
miRNA:   3'- gcuAGCUGGAGUu---CGGCA---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 171732 0.7 0.895876
Target:  5'- aCGAUCggGACgUCGAGC---UCGGGGCCc -3'
miRNA:   3'- -GCUAG--CUGgAGUUCGgcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 169620 0.67 0.974583
Target:  5'- aGGUCGGCCggCAGGUCcaggugUCGGGuCUg -3'
miRNA:   3'- gCUAGCUGGa-GUUCGGca----AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 164275 0.69 0.949861
Target:  5'- uCGAUCG-CCUCGGGCUucgucuccUuccucaccaaucccuUCGGGACCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGGc-------A---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 164195 0.73 0.788159
Target:  5'- uCGA-CGACUUCAugcagGGCC--UCGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU-----UCGGcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 160432 0.66 0.983257
Target:  5'- gCGGUCGAggacauCUUCAgccugggcgaaGGCCGUuucgCGGGGCa -3'
miRNA:   3'- -GCUAGCU------GGAGU-----------UCGGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 158965 0.69 0.943992
Target:  5'- ---aCGGCggCGAGCgGUUCGGcGGCCa -3'
miRNA:   3'- gcuaGCUGgaGUUCGgCAAGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 155652 0.76 0.645265
Target:  5'- --uUCGGCgUCcGGCCGUucgccccgcgUCGGGACCg -3'
miRNA:   3'- gcuAGCUGgAGuUCGGCA----------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 154516 0.68 0.95964
Target:  5'- uCGggCGAUgaCUCAgccGGCgGUUCGGG-CCg -3'
miRNA:   3'- -GCuaGCUG--GAGU---UCGgCAAGCCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.