miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 154153 0.7 0.919486
Target:  5'- uCGGUCG-CCUC---CCGUUCGGcgGACCg -3'
miRNA:   3'- -GCUAGCuGGAGuucGGCAAGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 149965 0.67 0.981336
Target:  5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3'
miRNA:   3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 149114 0.67 0.969189
Target:  5'- cCGcUCcuCCUCGAGCCGcgaggaccccCGGGACCc -3'
miRNA:   3'- -GCuAGcuGGAGUUCGGCaa--------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 148979 0.67 0.978598
Target:  5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3'
miRNA:   3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 148406 0.7 0.913915
Target:  5'- uGGcCGACCU---GCCGUgccuccugCGGGACCg -3'
miRNA:   3'- gCUaGCUGGAguuCGGCAa-------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 146840 0.73 0.796941
Target:  5'- aGGUCgccuggcccaggGugCUCGAGCuCGcgCGGGGCCa -3'
miRNA:   3'- gCUAG------------CugGAGUUCG-GCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 145199 0.68 0.966205
Target:  5'- gGAguUCGACCcCGGGCUG--CGGGACg -3'
miRNA:   3'- gCU--AGCUGGaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 143534 0.72 0.82242
Target:  5'- uGG-CGGCCUCGucGCCG-UCGGcGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUu-CGGCaAGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 141857 0.66 0.986015
Target:  5'- aGGUCGGCCaacacggUCcucuggaacgccgcGAGCCGUcucUCGGGuuCCa -3'
miRNA:   3'- gCUAGCUGG-------AG--------------UUCGGCA---AGCCCu-GG- -5'
9193 3' -54.3 NC_002512.2 + 140538 0.67 0.971979
Target:  5'- aCGGcCG-CCUCGAcGCCGUUCuGGuCCu -3'
miRNA:   3'- -GCUaGCuGGAGUU-CGGCAAGcCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 138028 0.76 0.645265
Target:  5'- gGAUcCGACUUcCGAGCCGacauccugCGGGACCg -3'
miRNA:   3'- gCUA-GCUGGA-GUUCGGCaa------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 137787 0.69 0.939537
Target:  5'- aGGUCGGCgCUCGgcgGGCCGcgcgucCGGcGGCCg -3'
miRNA:   3'- gCUAGCUG-GAGU---UCGGCaa----GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 137285 0.66 0.983257
Target:  5'- uCGucgCGACC---GGCC--UCGGGACCg -3'
miRNA:   3'- -GCua-GCUGGaguUCGGcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 136648 0.66 0.983257
Target:  5'- cCGcUgGACCguUCAGGCCGUgacgaGGGAgCg -3'
miRNA:   3'- -GCuAgCUGG--AGUUCGGCAag---CCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 135328 0.67 0.977006
Target:  5'- aGGUCGGCgUC-AGCCGcgCcgGGGugCu -3'
miRNA:   3'- gCUAGCUGgAGuUCGGCaaG--CCCugG- -5'
9193 3' -54.3 NC_002512.2 + 134858 0.66 0.989482
Target:  5'- cCGcgCGACguCUCGGgcgacGCCGUcgGGGACCu -3'
miRNA:   3'- -GCuaGCUG--GAGUU-----CGGCAagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 134299 0.71 0.86156
Target:  5'- gGAUCGuCUUCGAGgaCGUcgcCGGGGCCg -3'
miRNA:   3'- gCUAGCuGGAGUUCg-GCAa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 133688 0.67 0.979255
Target:  5'- uGGcCGACCUCGcGGCCGccUCccGGACCa -3'
miRNA:   3'- gCUaGCUGGAGU-UCGGCa-AGc-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 129492 0.68 0.95964
Target:  5'- aGA-CGACgCUCuccgcGGCCGggaagUCGGGAgCCg -3'
miRNA:   3'- gCUaGCUG-GAGu----UCGGCa----AGCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 128185 0.78 0.527782
Target:  5'- aGGUCG-CCgagCGGGCCGccggCGGGACCg -3'
miRNA:   3'- gCUAGCuGGa--GUUCGGCaa--GCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.