miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 127912 0.72 0.82242
Target:  5'- gGAUCGGCCaCGAGCCcgccggCGGGcCCg -3'
miRNA:   3'- gCUAGCUGGaGUUCGGcaa---GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 127646 0.69 0.943992
Target:  5'- gGAUCGGguCgCUCGgacGGCCGgUCGaGGGCCg -3'
miRNA:   3'- gCUAGCU--G-GAGU---UCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 127467 0.67 0.969188
Target:  5'- aGGUCGGgCagAAGCgGUUCGuGGCCg -3'
miRNA:   3'- gCUAGCUgGagUUCGgCAAGCcCUGG- -5'
9193 3' -54.3 NC_002512.2 + 127385 0.66 0.989482
Target:  5'- --cUCGuCCUCcccguccGCCGccugCGGGACCg -3'
miRNA:   3'- gcuAGCuGGAGuu-----CGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 126861 0.67 0.977006
Target:  5'- -cGUCGuCCUCuucCCGUcCGGGACUg -3'
miRNA:   3'- gcUAGCuGGAGuucGGCAaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 126263 0.66 0.98813
Target:  5'- cCGAagcCGACCUCcAGCgGUacCGGGagGCCg -3'
miRNA:   3'- -GCUa--GCUGGAGuUCGgCAa-GCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 124828 0.66 0.986647
Target:  5'- --uUCGGCUgCGuGCCGgacacCGGGACCu -3'
miRNA:   3'- gcuAGCUGGaGUuCGGCaa---GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 124740 0.66 0.986491
Target:  5'- cCGAcUCGGCCUguucgugGAGCCGUcgUCGGcccagacGACCg -3'
miRNA:   3'- -GCU-AGCUGGAg------UUCGGCA--AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 124662 0.69 0.939537
Target:  5'- uGAUCGucacCCUCAccGCCagaCGGGACCu -3'
miRNA:   3'- gCUAGCu---GGAGUu-CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 124297 0.76 0.635366
Target:  5'- gCGGcUCGACCgcgCgGAGCUGaUCGGGGCCg -3'
miRNA:   3'- -GCU-AGCUGGa--G-UUCGGCaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 124239 0.67 0.977006
Target:  5'- gCGGcUCGcccuACCUC-GGCCGggucUCGGaGACCg -3'
miRNA:   3'- -GCU-AGC----UGGAGuUCGGCa---AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 123331 0.68 0.955305
Target:  5'- -cGUCGACUUCGGGCCGcuggagcccccgUCcaagguccGGGGCCg -3'
miRNA:   3'- gcUAGCUGGAGUUCGGCa-----------AG--------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 123164 0.67 0.974583
Target:  5'- gCGAUCGccGCCgaggCcgAGGCCGaggCGGGACg -3'
miRNA:   3'- -GCUAGC--UGGa---G--UUCGGCaa-GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 122030 0.67 0.971979
Target:  5'- gGAUCGGCgCUCGcGCaCGccCGGGGCg -3'
miRNA:   3'- gCUAGCUG-GAGUuCG-GCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 121333 0.74 0.751797
Target:  5'- aCGGU-GACCUCGcuCCGgcggCGGGGCCg -3'
miRNA:   3'- -GCUAgCUGGAGUucGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 120731 0.68 0.966205
Target:  5'- gCGAUCcgucACCUCAgcAGCCGggCGGcGAguCCg -3'
miRNA:   3'- -GCUAGc---UGGAGU--UCGGCaaGCC-CU--GG- -5'
9193 3' -54.3 NC_002512.2 + 119307 0.68 0.956048
Target:  5'- aGAUCGACgUCAAGCUc-UCGGucaucucgauGGCCg -3'
miRNA:   3'- gCUAGCUGgAGUUCGGcaAGCC----------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 118537 0.67 0.969188
Target:  5'- gGGUCGuCCUCGuGCgCGccCGGGACg -3'
miRNA:   3'- gCUAGCuGGAGUuCG-GCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 117951 0.7 0.919487
Target:  5'- uGAgcgcCGACCUgGAGCUGUUCcGGcACCc -3'
miRNA:   3'- gCUa---GCUGGAgUUCGGCAAGcCC-UGG- -5'
9193 3' -54.3 NC_002512.2 + 117107 0.68 0.963024
Target:  5'- gGGUCaucaACCUCAAGgccaCCGUgucgCGGGACg -3'
miRNA:   3'- gCUAGc---UGGAGUUC----GGCAa---GCCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.