Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 117029 | 0.78 | 0.508843 |
Target: 5'- gGAcgCGGCCaUCGAGCUGUUCGGGcugcuGCCg -3' miRNA: 3'- gCUa-GCUGG-AGUUCGGCAAGCCC-----UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 116752 | 0.66 | 0.986647 |
Target: 5'- gCGAUgGACCaggcCAGccGCUGUUCGuGGACg -3' miRNA: 3'- -GCUAgCUGGa---GUU--CGGCAAGC-CCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 116159 | 0.69 | 0.943992 |
Target: 5'- --cUCGGCCcgCAGaucGCCGcccgcgUCGGGACCc -3' miRNA: 3'- gcuAGCUGGa-GUU---CGGCa-----AGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 115744 | 0.66 | 0.986647 |
Target: 5'- gGGUCGuCCUCugccGGCUGcUCcuGGACCg -3' miRNA: 3'- gCUAGCuGGAGu---UCGGCaAGc-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 115664 | 0.69 | 0.934859 |
Target: 5'- cCGAUCGGCCUgCAcgugGGCuCGggCcGGGCCu -3' miRNA: 3'- -GCUAGCUGGA-GU----UCG-GCaaGcCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 114525 | 0.7 | 0.895876 |
Target: 5'- cCGGUCGACCugcugacgcacaUCAAGCUGagCGuGGGCg -3' miRNA: 3'- -GCUAGCUGG------------AGUUCGGCaaGC-CCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 114171 | 0.68 | 0.952246 |
Target: 5'- cCGGUCcuCCUCGGuggcGCCGgcgUCGGGcCCg -3' miRNA: 3'- -GCUAGcuGGAGUU----CGGCa--AGCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 113156 | 0.76 | 0.635366 |
Target: 5'- ---cCGGCCUCGccgcGGCCGggCGGGACg -3' miRNA: 3'- gcuaGCUGGAGU----UCGGCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 112952 | 0.68 | 0.95964 |
Target: 5'- cCGGUCGAgCCcCGAGUCG-UCGGGcgucacgaacGCCu -3' miRNA: 3'- -GCUAGCU-GGaGUUCGGCaAGCCC----------UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 112154 | 0.66 | 0.989483 |
Target: 5'- gCGGUCGACggCGAGCCGgcgcUCGaGcCCg -3' miRNA: 3'- -GCUAGCUGgaGUUCGGCa---AGCcCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 111905 | 0.77 | 0.585973 |
Target: 5'- aCGAgCGGCCgcgCGGGuuGUUCGGGugCc -3' miRNA: 3'- -GCUaGCUGGa--GUUCggCAAGCCCugG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 111379 | 0.69 | 0.938157 |
Target: 5'- uCGAggaaGACCUCGuAGCCGUcccgccccggcagcUCGGcGCCg -3' miRNA: 3'- -GCUag--CUGGAGU-UCGGCA--------------AGCCcUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 109816 | 0.66 | 0.985025 |
Target: 5'- -cAUCGACCccgcguucacgUCGAaccGCCGggcgUCGgGGACCg -3' miRNA: 3'- gcUAGCUGG-----------AGUU---CGGCa---AGC-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 109281 | 0.67 | 0.977006 |
Target: 5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3' miRNA: 3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 107067 | 0.66 | 0.98813 |
Target: 5'- cCGGUCGACgCgcuGGaCGUagGGGACCc -3' miRNA: 3'- -GCUAGCUG-GaguUCgGCAagCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 107011 | 0.68 | 0.967422 |
Target: 5'- gGGUCGGCCgaGAGCCGggcgCgcucccgacggaagaGGGACCc -3' miRNA: 3'- gCUAGCUGGagUUCGGCaa--G---------------CCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 103635 | 0.69 | 0.943557 |
Target: 5'- aGGUCGGCUUCGgacacccGGCCcuccUCGGcGGCCa -3' miRNA: 3'- gCUAGCUGGAGU-------UCGGca--AGCC-CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 103362 | 0.69 | 0.939537 |
Target: 5'- aCGGUCGAggUCAGGCCGc-CGGaGCCg -3' miRNA: 3'- -GCUAGCUggAGUUCGGCaaGCCcUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 102947 | 0.7 | 0.919486 |
Target: 5'- gGGUCGACCg-GGGCgCGggCGGGuaucGCCa -3' miRNA: 3'- gCUAGCUGGagUUCG-GCaaGCCC----UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 102748 | 0.67 | 0.979255 |
Target: 5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3' miRNA: 3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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