miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 3512 0.68 0.952245
Target:  5'- -cGUCGGCCcuccaccCGAGCCcg-CGGGGCCc -3'
miRNA:   3'- gcUAGCUGGa------GUUCGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 74581 0.7 0.913915
Target:  5'- aGAUCGuCCUCGgccauggucacGGCCGa-CGcGGACCg -3'
miRNA:   3'- gCUAGCuGGAGU-----------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 76814 0.77 0.585973
Target:  5'- uCGAUCGccGCCUCGAccGCCGacccgacCGGGACCg -3'
miRNA:   3'- -GCUAGC--UGGAGUU--CGGCaa-----GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 63356 0.68 0.952245
Target:  5'- gGAUCGucuucguCCUCAccgucgggGGCCGaUCcGGACCg -3'
miRNA:   3'- gCUAGCu------GGAGU--------UCGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 128185 0.78 0.527782
Target:  5'- aGGUCG-CCgagCGGGCCGccggCGGGACCg -3'
miRNA:   3'- gCUAGCuGGa--GUUCGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 109281 0.67 0.977006
Target:  5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3'
miRNA:   3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 30704 0.75 0.665027
Target:  5'- ---aCGACCUCAuggaGGCCG-UCGaGGACCu -3'
miRNA:   3'- gcuaGCUGGAGU----UCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 44458 0.67 0.976772
Target:  5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 5269 0.67 0.974583
Target:  5'- gCGG-CGACCcCGAGCCcggUCGGcACCg -3'
miRNA:   3'- -GCUaGCUGGaGUUCGGca-AGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 79178 0.68 0.966205
Target:  5'- aCGGUCGGCCgcCGAGagccaacgguCCGUcggCGGcGACCg -3'
miRNA:   3'- -GCUAGCUGGa-GUUC----------GGCAa--GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 62733 0.68 0.966205
Target:  5'- uCGA-CGGCCUCGcggggcacGCCGaccUCGGaGACCa -3'
miRNA:   3'- -GCUaGCUGGAGUu-------CGGCa--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 86969 0.68 0.95964
Target:  5'- uCGGUCGACgaagcGGCCGUgaugUGGGACg -3'
miRNA:   3'- -GCUAGCUGgagu-UCGGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 119307 0.68 0.956048
Target:  5'- aGAUCGACgUCAAGCUc-UCGGucaucucgauGGCCg -3'
miRNA:   3'- gCUAGCUGgAGUUCGGcaAGCC----------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 82532 0.69 0.939537
Target:  5'- cCGGUCGGCCgCGcuCUGUcCGGGACg -3'
miRNA:   3'- -GCUAGCUGGaGUucGGCAaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 100176 0.69 0.934859
Target:  5'- gGAUCGAcaaccccgguuaCCUCGAGUCGgacggcgaUUCGGGcuacGCCg -3'
miRNA:   3'- gCUAGCU------------GGAGUUCGGC--------AAGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 2795 0.69 0.929959
Target:  5'- cCGAccCGGCCggcGGCCGg-CGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaguUCGGCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102947 0.7 0.919486
Target:  5'- gGGUCGACCg-GGGCgCGggCGGGuaucGCCa -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCaaGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 79123 0.7 0.908122
Target:  5'- cCGAgUCGGCCgUCAaucacgggucugGGCCGcgCGcGGGCCg -3'
miRNA:   3'- -GCU-AGCUGG-AGU------------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 41616 0.71 0.882769
Target:  5'- uGAacUCGACCUCGG--UGUUgGGGGCCa -3'
miRNA:   3'- gCU--AGCUGGAGUUcgGCAAgCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 18935 0.72 0.814079
Target:  5'- cCGGaCGACCUCGuuGGCC--UCGGGGCg -3'
miRNA:   3'- -GCUaGCUGGAGU--UCGGcaAGCCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.