miRNA display CGI


Results 61 - 80 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 119307 0.68 0.956048
Target:  5'- aGAUCGACgUCAAGCUc-UCGGucaucucgauGGCCg -3'
miRNA:   3'- gCUAGCUGgAGUUCGGcaAGCC----------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 117107 0.68 0.963024
Target:  5'- gGGUCaucaACCUCAAGgccaCCGUgucgCGGGACg -3'
miRNA:   3'- gCUAGc---UGGAGUUC----GGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 66871 0.75 0.68469
Target:  5'- gCGAUggUGACCUCGGGCCGcUCGaGGaacGCCa -3'
miRNA:   3'- -GCUA--GCUGGAGUUCGGCaAGC-CC---UGG- -5'
9193 3' -54.3 NC_002512.2 + 179454 0.72 0.846443
Target:  5'- aCGGUCGACgCUCAGuucuuagaaCGUUCGGGgaGCCa -3'
miRNA:   3'- -GCUAGCUG-GAGUUcg-------GCAAGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 5957 0.7 0.895876
Target:  5'- gGAUCGACCUCc--CCGUcCGGcucGACCu -3'
miRNA:   3'- gCUAGCUGGAGuucGGCAaGCC---CUGG- -5'
9193 3' -54.3 NC_002512.2 + 97202 0.7 0.908122
Target:  5'- cCGucugCGGCggCGGGCCGggCGGGACg -3'
miRNA:   3'- -GCua--GCUGgaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 154153 0.7 0.919486
Target:  5'- uCGGUCG-CCUC---CCGUUCGGcgGACCg -3'
miRNA:   3'- -GCUAGCuGGAGuucGGCAAGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 8923 0.69 0.934859
Target:  5'- aGggCGGCCUC-GGCCGggUCGGcGAUg -3'
miRNA:   3'- gCuaGCUGGAGuUCGGCa-AGCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 27846 0.69 0.939537
Target:  5'- gCGAcaCGACCgCGAGCCGgaccggcggGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaGUUCGGCaag------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102114 0.69 0.943992
Target:  5'- ---gCGGCCUC-GGCCGUcggaggGGGACCc -3'
miRNA:   3'- gcuaGCUGGAGuUCGGCAag----CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 124828 0.66 0.986647
Target:  5'- --uUCGGCUgCGuGCCGgacacCGGGACCu -3'
miRNA:   3'- gcuAGCUGGaGUuCGGCaa---GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 11585 0.66 0.986647
Target:  5'- aCGAgCGGCCgcccaGGGCCG---GGGACCc -3'
miRNA:   3'- -GCUaGCUGGag---UUCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 120731 0.68 0.966205
Target:  5'- gCGAUCcgucACCUCAgcAGCCGggCGGcGAguCCg -3'
miRNA:   3'- -GCUAGc---UGGAGU--UCGGCaaGCC-CU--GG- -5'
9193 3' -54.3 NC_002512.2 + 127467 0.67 0.969188
Target:  5'- aGGUCGGgCagAAGCgGUUCGuGGCCg -3'
miRNA:   3'- gCUAGCUgGagUUCGgCAAGCcCUGG- -5'
9193 3' -54.3 NC_002512.2 + 44458 0.67 0.976772
Target:  5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 109281 0.67 0.977006
Target:  5'- uGAUCGugauCC-CGuAGCCGUggGGGACg -3'
miRNA:   3'- gCUAGCu---GGaGU-UCGGCAagCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 35027 0.67 0.979255
Target:  5'- gGAaCGGCUg-AGGCCGaUCGGGGuCCg -3'
miRNA:   3'- gCUaGCUGGagUUCGGCaAGCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 191574 0.67 0.979255
Target:  5'- cCGGUCacgGAgUUCAGGCCacuGUUCugcGGGACCc -3'
miRNA:   3'- -GCUAG---CUgGAGUUCGG---CAAG---CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 137285 0.66 0.983257
Target:  5'- uCGucgCGACC---GGCC--UCGGGACCg -3'
miRNA:   3'- -GCua-GCUGGaguUCGGcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 32101 0.66 0.985025
Target:  5'- cCGggUGuCCUCGcGGUCGaggUCGGGAUCg -3'
miRNA:   3'- -GCuaGCuGGAGU-UCGGCa--AGCCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.