miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 154153 0.7 0.919486
Target:  5'- uCGGUCG-CCUC---CCGUUCGGcgGACCg -3'
miRNA:   3'- -GCUAGCuGGAGuucGGCAAGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 97202 0.7 0.908122
Target:  5'- cCGucugCGGCggCGGGCCGggCGGGACg -3'
miRNA:   3'- -GCua--GCUGgaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 5957 0.7 0.895876
Target:  5'- gGAUCGACCUCc--CCGUcCGGcucGACCu -3'
miRNA:   3'- gCUAGCUGGAGuucGGCAaGCC---CUGG- -5'
9193 3' -54.3 NC_002512.2 + 179454 0.72 0.846443
Target:  5'- aCGGUCGACgCUCAGuucuuagaaCGUUCGGGgaGCCa -3'
miRNA:   3'- -GCUAGCUG-GAGUUcg-------GCAAGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 66871 0.75 0.68469
Target:  5'- gCGAUggUGACCUCGGGCCGcUCGaGGaacGCCa -3'
miRNA:   3'- -GCUA--GCUGGAGUUCGGCaAGC-CC---UGG- -5'
9193 3' -54.3 NC_002512.2 + 118537 0.67 0.969188
Target:  5'- gGGUCGuCCUCGuGCgCGccCGGGACg -3'
miRNA:   3'- gCUAGCuGGAGUuCG-GCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 54356 0.67 0.974583
Target:  5'- uCGAUCGcggccacCCUcCAGGCC-UUCuGGACCg -3'
miRNA:   3'- -GCUAGCu------GGA-GUUCGGcAAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 55662 0.67 0.977006
Target:  5'- gGA-CGA-CUCGAcGCCGggCGGGGCg -3'
miRNA:   3'- gCUaGCUgGAGUU-CGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 216047 0.68 0.956048
Target:  5'- gCGAgugCGAC----GGgCGUUCGGGGCCg -3'
miRNA:   3'- -GCUa--GCUGgaguUCgGCAAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 227998 0.68 0.956048
Target:  5'- cCGAg-GGCCg-GAGCCGgaCGGGACg -3'
miRNA:   3'- -GCUagCUGGagUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 96710 0.68 0.956048
Target:  5'- uCGAcuauUUGACCcccgCGGGCCGgcccgCGGGAaCCg -3'
miRNA:   3'- -GCU----AGCUGGa---GUUCGGCaa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 114171 0.68 0.952246
Target:  5'- cCGGUCcuCCUCGGuggcGCCGgcgUCGGGcCCg -3'
miRNA:   3'- -GCUAGcuGGAGUU----CGGCa--AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 102748 0.67 0.979255
Target:  5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3'
miRNA:   3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 148979 0.67 0.978598
Target:  5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3'
miRNA:   3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 190069 0.69 0.948228
Target:  5'- aCGAgcuggccgCGGCCggucagCGGGCuCGgcugCGGGACCu -3'
miRNA:   3'- -GCUa-------GCUGGa-----GUUCG-GCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 164275 0.69 0.949861
Target:  5'- uCGAUCG-CCUCGGGCUucgucuccUuccucaccaaucccuUCGGGACCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGGc-------A---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 124740 0.66 0.986491
Target:  5'- cCGAcUCGGCCUguucgugGAGCCGUcgUCGGcccagacGACCg -3'
miRNA:   3'- -GCU-AGCUGGAg------UUCGGCA--AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 88150 0.68 0.952246
Target:  5'- aCGAUCcGCCcguGGCCGUcgugCGGGAaCCg -3'
miRNA:   3'- -GCUAGcUGGaguUCGGCAa---GCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 203974 0.68 0.952246
Target:  5'- -cAUCGACCUCAuGGaCCGgaUCcGGACCg -3'
miRNA:   3'- gcUAGCUGGAGU-UC-GGCa-AGcCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.