Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 164275 | 0.69 | 0.949861 |
Target: 5'- uCGAUCG-CCUCGGGCUucgucuccUuccucaccaaucccuUCGGGACCg -3' miRNA: 3'- -GCUAGCuGGAGUUCGGc-------A---------------AGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 145199 | 0.68 | 0.966205 |
Target: 5'- gGAguUCGACCcCGGGCUG--CGGGACg -3' miRNA: 3'- gCU--AGCUGGaGUUCGGCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 203974 | 0.68 | 0.952246 |
Target: 5'- -cAUCGACCUCAuGGaCCGgaUCcGGACCg -3' miRNA: 3'- gcUAGCUGGAGU-UC-GGCa-AGcCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 96710 | 0.68 | 0.956048 |
Target: 5'- uCGAcuauUUGACCcccgCGGGCCGgcccgCGGGAaCCg -3' miRNA: 3'- -GCU----AGCUGGa---GUUCGGCaa---GCCCU-GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 227998 | 0.68 | 0.956048 |
Target: 5'- cCGAg-GGCCg-GAGCCGgaCGGGACg -3' miRNA: 3'- -GCUagCUGGagUUCGGCaaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 216047 | 0.68 | 0.956048 |
Target: 5'- gCGAgugCGAC----GGgCGUUCGGGGCCg -3' miRNA: 3'- -GCUa--GCUGgaguUCgGCAAGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 129492 | 0.68 | 0.95964 |
Target: 5'- aGA-CGACgCUCuccgcGGCCGggaagUCGGGAgCCg -3' miRNA: 3'- gCUaGCUG-GAGu----UCGGCa----AGCCCU-GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 226195 | 0.68 | 0.95964 |
Target: 5'- gGGUCGACCUCc-GUCGgggaCGGGAggaCCu -3' miRNA: 3'- gCUAGCUGGAGuuCGGCaa--GCCCU---GG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 154516 | 0.68 | 0.95964 |
Target: 5'- uCGggCGAUgaCUCAgccGGCgGUUCGGG-CCg -3' miRNA: 3'- -GCuaGCUG--GAGU---UCGgCAAGCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 190069 | 0.69 | 0.948228 |
Target: 5'- aCGAgcuggccgCGGCCggucagCGGGCuCGgcugCGGGACCu -3' miRNA: 3'- -GCUa-------GCUGGa-----GUUCG-GCaa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 214132 | 0.68 | 0.965896 |
Target: 5'- aGGUgCGGCCUCAGcGCC-UUCgacggcaucuaccGGGACCc -3' miRNA: 3'- gCUA-GCUGGAGUU-CGGcAAG-------------CCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 149965 | 0.67 | 0.981336 |
Target: 5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3' miRNA: 3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 182434 | 0.66 | 0.983257 |
Target: 5'- gGAacUCGGCCUCGGccuccGCCGUgCGGG-Cg -3' miRNA: 3'- gCU--AGCUGGAGUU-----CGGCAaGCCCuGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 160432 | 0.66 | 0.983257 |
Target: 5'- gCGGUCGAggacauCUUCAgccugggcgaaGGCCGUuucgCGGGGCa -3' miRNA: 3'- -GCUAGCU------GGAGU-----------UCGGCAa---GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 228144 | 0.67 | 0.981336 |
Target: 5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3' miRNA: 3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 114171 | 0.68 | 0.952246 |
Target: 5'- cCGGUCcuCCUCGGuggcGCCGgcgUCGGGcCCg -3' miRNA: 3'- -GCUAGcuGGAGUU----CGGCa--AGCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 77823 | 0.67 | 0.981336 |
Target: 5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3' miRNA: 3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 102748 | 0.67 | 0.979255 |
Target: 5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3' miRNA: 3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 148979 | 0.67 | 0.978598 |
Target: 5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3' miRNA: 3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 88150 | 0.68 | 0.952246 |
Target: 5'- aCGAUCcGCCcguGGCCGUcgugCGGGAaCCg -3' miRNA: 3'- -GCUAGcUGGaguUCGGCAa---GCCCU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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