miRNA display CGI


Results 121 - 140 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 190069 0.69 0.948228
Target:  5'- aCGAgcuggccgCGGCCggucagCGGGCuCGgcugCGGGACCu -3'
miRNA:   3'- -GCUa-------GCUGGa-----GUUCG-GCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 164275 0.69 0.949861
Target:  5'- uCGAUCG-CCUCGGGCUucgucuccUuccucaccaaucccuUCGGGACCg -3'
miRNA:   3'- -GCUAGCuGGAGUUCGGc-------A---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 203974 0.68 0.952246
Target:  5'- -cAUCGACCUCAuGGaCCGgaUCcGGACCg -3'
miRNA:   3'- gcUAGCUGGAGU-UC-GGCa-AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 226195 0.68 0.95964
Target:  5'- gGGUCGACCUCc-GUCGgggaCGGGAggaCCu -3'
miRNA:   3'- gCUAGCUGGAGuuCGGCaa--GCCCU---GG- -5'
9193 3' -54.3 NC_002512.2 + 225827 0.72 0.814079
Target:  5'- ----gGACCUCGAGCCGcggGGGAUCg -3'
miRNA:   3'- gcuagCUGGAGUUCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 190000 0.79 0.471873
Target:  5'- aGGUCGACCUCAaguuGGCCGcggUCGaGGCCg -3'
miRNA:   3'- gCUAGCUGGAGU----UCGGCa--AGCcCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212494 0.79 0.480992
Target:  5'- aCGAcucCGACCUCGGGCUGgaCGcGGACCa -3'
miRNA:   3'- -GCUa--GCUGGAGUUCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 117029 0.78 0.508843
Target:  5'- gGAcgCGGCCaUCGAGCUGUUCGGGcugcuGCCg -3'
miRNA:   3'- gCUa-GCUGG-AGUUCGGCAAGCCC-----UGG- -5'
9193 3' -54.3 NC_002512.2 + 194862 0.78 0.546978
Target:  5'- cCGAUCGGCCUC-AGCCGUUCccaccuGGCCc -3'
miRNA:   3'- -GCUAGCUGGAGuUCGGCAAGcc----CUGG- -5'
9193 3' -54.3 NC_002512.2 + 173504 0.77 0.560546
Target:  5'- --cUCGACCUCGccccGCCGUccgccgauccguccgUCGGGGCCg -3'
miRNA:   3'- gcuAGCUGGAGUu---CGGCA---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 124297 0.76 0.635366
Target:  5'- gCGGcUCGACCgcgCgGAGCUGaUCGGGGCCg -3'
miRNA:   3'- -GCU-AGCUGGa--G-UUCGGCaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 113156 0.76 0.635366
Target:  5'- ---cCGGCCUCGccgcGGCCGggCGGGACg -3'
miRNA:   3'- gcuaGCUGGAGU----UCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 138028 0.76 0.645265
Target:  5'- gGAUcCGACUUcCGAGCCGacauccugCGGGACCg -3'
miRNA:   3'- gCUA-GCUGGA-GUUCGGCaa------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 155652 0.76 0.645265
Target:  5'- --uUCGGCgUCcGGCCGUucgccccgcgUCGGGACCg -3'
miRNA:   3'- gcuAGCUGgAGuUCGGCA----------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 211960 0.75 0.703219
Target:  5'- gGGUCGGCUgcuuccgUCAggacgcGGCCGUcguccUCGGGGCCg -3'
miRNA:   3'- gCUAGCUGG-------AGU------UCGGCA-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212977 0.75 0.70419
Target:  5'- uCGAgaucugCGACCUCAucgucgccgcGGCCGUcgggccCGGGGCCc -3'
miRNA:   3'- -GCUa-----GCUGGAGU----------UCGGCAa-----GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 121333 0.74 0.751797
Target:  5'- aCGGU-GACCUCGcuCCGgcggCGGGGCCg -3'
miRNA:   3'- -GCUAgCUGGAGUucGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212431 0.73 0.770208
Target:  5'- aGGUCGAgUUCGGGCCGgcCGGccgcGACCg -3'
miRNA:   3'- gCUAGCUgGAGUUCGGCaaGCC----CUGG- -5'
9193 3' -54.3 NC_002512.2 + 164195 0.73 0.788159
Target:  5'- uCGA-CGACUUCAugcagGGCC--UCGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU-----UCGGcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 146840 0.73 0.796941
Target:  5'- aGGUCgccuggcccaggGugCUCGAGCuCGcgCGGGGCCa -3'
miRNA:   3'- gCUAG------------CugGAGUUCG-GCaaGCCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.