miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 216160 0.66 0.98813
Target:  5'- -cGUCGcgccCCUCAGGCucccgCGUcUCGGGAUCg -3'
miRNA:   3'- gcUAGCu---GGAGUUCG-----GCA-AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 95552 0.66 0.989483
Target:  5'- gGAgcUCGGCCgcggCGAGuCCG-UCGGcGCCg -3'
miRNA:   3'- gCU--AGCUGGa---GUUC-GGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 11273 0.66 0.989483
Target:  5'- uCGAUUGugUUCAugguGCCcacagCGGGACg -3'
miRNA:   3'- -GCUAGCugGAGUu---CGGcaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 99709 0.66 0.989483
Target:  5'- --cUCGuCCUCGuccgcGCCG-UCGcGGGCCg -3'
miRNA:   3'- gcuAGCuGGAGUu----CGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 112154 0.66 0.989483
Target:  5'- gCGGUCGACggCGAGCCGgcgcUCGaGcCCg -3'
miRNA:   3'- -GCUAGCUGgaGUUCGGCa---AGCcCuGG- -5'
9193 3' -54.3 NC_002512.2 + 124740 0.66 0.986491
Target:  5'- cCGAcUCGGCCUguucgugGAGCCGUcgUCGGcccagacGACCg -3'
miRNA:   3'- -GCU-AGCUGGAg------UUCGGCA--AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 141857 0.66 0.986015
Target:  5'- aGGUCGGCCaacacggUCcucuggaacgccgcGAGCCGUcucUCGGGuuCCa -3'
miRNA:   3'- gCUAGCUGG-------AG--------------UUCGGCA---AGCCCu-GG- -5'
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5'
9193 3' -54.3 NC_002512.2 + 149965 0.67 0.981336
Target:  5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3'
miRNA:   3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 228144 0.67 0.981336
Target:  5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 160432 0.66 0.983257
Target:  5'- gCGGUCGAggacauCUUCAgccugggcgaaGGCCGUuucgCGGGGCa -3'
miRNA:   3'- -GCUAGCU------GGAGU-----------UCGGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 182434 0.66 0.983257
Target:  5'- gGAacUCGGCCUCGGccuccGCCGUgCGGG-Cg -3'
miRNA:   3'- gCU--AGCUGGAGUU-----CGGCAaGCCCuGg -5'
9193 3' -54.3 NC_002512.2 + 188418 0.66 0.983257
Target:  5'- uGAcCGACCaCGAGaCCGUcgucuacgUCGGGAgCa -3'
miRNA:   3'- gCUaGCUGGaGUUC-GGCA--------AGCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 220798 0.66 0.983257
Target:  5'- gGAUCGuCCUCGAcCCGcUCGuGGuCCc -3'
miRNA:   3'- gCUAGCuGGAGUUcGGCaAGC-CCuGG- -5'
9193 3' -54.3 NC_002512.2 + 39386 0.66 0.983257
Target:  5'- aCGAUCGAa---GAGCCG-UCGGaACCu -3'
miRNA:   3'- -GCUAGCUggagUUCGGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 136648 0.66 0.983257
Target:  5'- cCGcUgGACCguUCAGGCCGUgacgaGGGAgCg -3'
miRNA:   3'- -GCuAgCUGG--AGUUCGGCAag---CCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 193435 0.66 0.983257
Target:  5'- aCGAgcgCGACCgCGGccGCCGguggCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUGGaGUU--CGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 220342 0.66 0.983982
Target:  5'- cCGGaCGGCCUCGucaacgccguGGCCGUggCcgccgccgccgugcuGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU----------UCGGCAa-G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218496 0.66 0.985025
Target:  5'- gGGUCGuCCgcgucCGAGCCG-UC-GGACCc -3'
miRNA:   3'- gCUAGCuGGa----GUUCGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 109816 0.66 0.985025
Target:  5'- -cAUCGACCccgcguucacgUCGAaccGCCGggcgUCGgGGACCg -3'
miRNA:   3'- gcUAGCUGG-----------AGUU---CGGCa---AGC-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.