miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 193435 0.66 0.983257
Target:  5'- aCGAgcgCGACCgCGGccGCCGguggCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUGGaGUU--CGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 136648 0.66 0.983257
Target:  5'- cCGcUgGACCguUCAGGCCGUgacgaGGGAgCg -3'
miRNA:   3'- -GCuAgCUGG--AGUUCGGCAag---CCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 126861 0.67 0.977006
Target:  5'- -cGUCGuCCUCuucCCGUcCGGGACUg -3'
miRNA:   3'- gcUAGCuGGAGuucGGCAaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 190207 0.67 0.977006
Target:  5'- aGGUCGGCggCGcGGUCGUcCGGGACg -3'
miRNA:   3'- gCUAGCUGgaGU-UCGGCAaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 82361 0.67 0.977006
Target:  5'- --uUCGcGCCUCGcGCCGggaucggCGGGACg -3'
miRNA:   3'- gcuAGC-UGGAGUuCGGCaa-----GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 224087 0.67 0.976772
Target:  5'- aCGGagGACCUCAGGgggaCCGUgUCGGucgugguGACCa -3'
miRNA:   3'- -GCUagCUGGAGUUC----GGCA-AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 220485 0.67 0.976058
Target:  5'- -cGUCcGCCUCAcccgcagcgaGGCCGUggccugcgucgccCGGGACCu -3'
miRNA:   3'- gcUAGcUGGAGU----------UCGGCAa------------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 98828 0.67 0.974583
Target:  5'- gGAUCGGCCUCcGGCg---CGGcGCCg -3'
miRNA:   3'- gCUAGCUGGAGuUCGgcaaGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 188283 0.67 0.974583
Target:  5'- aGGUCGAgUUCAcGGCCGgcaacCGGGugGCCu -3'
miRNA:   3'- gCUAGCUgGAGU-UCGGCaa---GCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 95099 0.67 0.974583
Target:  5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3'
miRNA:   3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 148979 0.67 0.978598
Target:  5'- cCGcgCGACC-CAccaccugaaccaccGGCCGg--GGGGCCg -3'
miRNA:   3'- -GCuaGCUGGaGU--------------UCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102748 0.67 0.979255
Target:  5'- aCGAUCgGACUgUAGGCCGUgaCGGcGACa -3'
miRNA:   3'- -GCUAG-CUGGaGUUCGGCAa-GCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 39386 0.66 0.983257
Target:  5'- aCGAUCGAa---GAGCCG-UCGGaACCu -3'
miRNA:   3'- -GCUAGCUggagUUCGGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 220798 0.66 0.983257
Target:  5'- gGAUCGuCCUCGAcCCGcUCGuGGuCCc -3'
miRNA:   3'- gCUAGCuGGAGUUcGGCaAGC-CCuGG- -5'
9193 3' -54.3 NC_002512.2 + 188418 0.66 0.983257
Target:  5'- uGAcCGACCaCGAGaCCGUcgucuacgUCGGGAgCa -3'
miRNA:   3'- gCUaGCUGGaGUUC-GGCA--------AGCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 182434 0.66 0.983257
Target:  5'- gGAacUCGGCCUCGGccuccGCCGUgCGGG-Cg -3'
miRNA:   3'- gCU--AGCUGGAGUU-----CGGCAaGCCCuGg -5'
9193 3' -54.3 NC_002512.2 + 160432 0.66 0.983257
Target:  5'- gCGGUCGAggacauCUUCAgccugggcgaaGGCCGUuucgCGGGGCa -3'
miRNA:   3'- -GCUAGCU------GGAGU-----------UCGGCAa---GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 228144 0.67 0.981336
Target:  5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 149965 0.67 0.981336
Target:  5'- --cUCGGCCuUCGAGCCcUUCacccuGGACCu -3'
miRNA:   3'- gcuAGCUGG-AGUUCGGcAAGc----CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 77823 0.67 0.981336
Target:  5'- gCGAguaCGugCUCGAcGCCGggCGGcaGACUa -3'
miRNA:   3'- -GCUa--GCugGAGUU-CGGCaaGCC--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.