Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 190207 | 0.67 | 0.977006 |
Target: 5'- aGGUCGGCggCGcGGUCGUcCGGGACg -3' miRNA: 3'- gCUAGCUGgaGU-UCGGCAaGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 82361 | 0.67 | 0.977006 |
Target: 5'- --uUCGcGCCUCGcGCCGggaucggCGGGACg -3' miRNA: 3'- gcuAGC-UGGAGUuCGGCaa-----GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 224087 | 0.67 | 0.976772 |
Target: 5'- aCGGagGACCUCAGGgggaCCGUgUCGGucgugguGACCa -3' miRNA: 3'- -GCUagCUGGAGUUC----GGCA-AGCC-------CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 220485 | 0.67 | 0.976058 |
Target: 5'- -cGUCcGCCUCAcccgcagcgaGGCCGUggccugcgucgccCGGGACCu -3' miRNA: 3'- gcUAGcUGGAGU----------UCGGCAa------------GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 98828 | 0.67 | 0.974583 |
Target: 5'- gGAUCGGCCUCcGGCg---CGGcGCCg -3' miRNA: 3'- gCUAGCUGGAGuUCGgcaaGCCcUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 188283 | 0.67 | 0.974583 |
Target: 5'- aGGUCGAgUUCAcGGCCGgcaacCGGGugGCCu -3' miRNA: 3'- gCUAGCUgGAGU-UCGGCaa---GCCC--UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 95099 | 0.67 | 0.974583 |
Target: 5'- ----aGACCUCGAGCuCGgcgacggCGGGcCCg -3' miRNA: 3'- gcuagCUGGAGUUCG-GCaa-----GCCCuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 179454 | 0.72 | 0.846443 |
Target: 5'- aCGGUCGACgCUCAGuucuuagaaCGUUCGGGgaGCCa -3' miRNA: 3'- -GCUAGCUG-GAGUUcg-------GCAAGCCC--UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 134299 | 0.71 | 0.86156 |
Target: 5'- gGAUCGuCUUCGAGgaCGUcgcCGGGGCCg -3' miRNA: 3'- gCUAGCuGGAGUUCg-GCAa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 67495 | 0.71 | 0.875902 |
Target: 5'- uCGGUCGGCgUCuuggGGCUGggagCGGGACa -3' miRNA: 3'- -GCUAGCUGgAGu---UCGGCaa--GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 41616 | 0.71 | 0.882769 |
Target: 5'- uGAacUCGACCUCGG--UGUUgGGGGCCa -3' miRNA: 3'- gCU--AGCUGGAGUUcgGCAAgCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 5957 | 0.7 | 0.895876 |
Target: 5'- gGAUCGACCUCc--CCGUcCGGcucGACCu -3' miRNA: 3'- gCUAGCUGGAGuucGGCAaGCC---CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 18935 | 0.72 | 0.814079 |
Target: 5'- cCGGaCGACCUCGuuGGCC--UCGGGGCg -3' miRNA: 3'- -GCUaGCUGGAGU--UCGGcaAGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 85018 | 0.74 | 0.742439 |
Target: 5'- gGAUCGugCUCAGcuGCCGUUCGaacagguaguaGGACa -3' miRNA: 3'- gCUAGCugGAGUU--CGGCAAGC-----------CCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 66871 | 0.75 | 0.68469 |
Target: 5'- gCGAUggUGACCUCGGGCCGcUCGaGGaacGCCa -3' miRNA: 3'- -GCUA--GCUGGAGUUCGGCaAGC-CC---UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 30704 | 0.75 | 0.665027 |
Target: 5'- ---aCGACCUCAuggaGGCCG-UCGaGGACCu -3' miRNA: 3'- gcuaGCUGGAGU----UCGGCaAGC-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 111905 | 0.77 | 0.585973 |
Target: 5'- aCGAgCGGCCgcgCGGGuuGUUCGGGugCc -3' miRNA: 3'- -GCUaGCUGGa--GUUCggCAAGCCCugG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 76814 | 0.77 | 0.585973 |
Target: 5'- uCGAUCGccGCCUCGAccGCCGacccgacCGGGACCg -3' miRNA: 3'- -GCUAGC--UGGAGUU--CGGCaa-----GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 128185 | 0.78 | 0.527782 |
Target: 5'- aGGUCG-CCgagCGGGCCGccggCGGGACCg -3' miRNA: 3'- gCUAGCuGGa--GUUCGGCaa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 134858 | 0.66 | 0.989482 |
Target: 5'- cCGcgCGACguCUCGGgcgacGCCGUcgGGGACCu -3' miRNA: 3'- -GCuaGCUG--GAGUU-----CGGCAagCCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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