miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 5' -61.5 NC_002512.2 + 113717 0.71 0.536333
Target:  5'- uGGGUCCCGacgcgggcggcgaUCUGCgggCCGAGGUgcgCGGUc -3'
miRNA:   3'- gCCCAGGGC-------------AGGUGa--GGCUCCA---GCCA- -5'
9193 5' -61.5 NC_002512.2 + 121055 0.74 0.384213
Target:  5'- cCGGGUaCCCG-CCGC-CCGAGGcgCGGa -3'
miRNA:   3'- -GCCCA-GGGCaGGUGaGGCUCCa-GCCa -5'
9193 5' -61.5 NC_002512.2 + 127819 0.69 0.611998
Target:  5'- uCGGGUCCCG---GCUCCGGGaggucGUCGGc -3'
miRNA:   3'- -GCCCAGGGCaggUGAGGCUC-----CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 135295 0.68 0.672503
Target:  5'- uCGGGcCCCaGUUCGCcuguccggcgguccCCGAGGUCGGc -3'
miRNA:   3'- -GCCCaGGG-CAGGUGa-------------GGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 149141 0.66 0.777903
Target:  5'- cCGGGaCCCGggaCCGC-CgCGGGGcCGGUg -3'
miRNA:   3'- -GCCCaGGGCa--GGUGaG-GCUCCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 150500 0.67 0.769248
Target:  5'- ---uUCUCGUCCGC-CCGcGGGUCGGg -3'
miRNA:   3'- gcccAGGGCAGGUGaGGC-UCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 151547 0.68 0.705212
Target:  5'- gGGGUCCCGUCCcgguCUcgccuucCCGAGaGcCGGc -3'
miRNA:   3'- gCCCAGGGCAGGu---GA-------GGCUC-CaGCCa -5'
9193 5' -61.5 NC_002512.2 + 151963 0.68 0.687517
Target:  5'- cCGGGUCuCCGUgaACggagaccggCCGuGGUCGGUu -3'
miRNA:   3'- -GCCCAG-GGCAggUGa--------GGCuCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 152480 0.77 0.257199
Target:  5'- cCGGGUCCUGUgacgcgacggcgCCACggguggagcguUCCGGGGUCGGg -3'
miRNA:   3'- -GCCCAGGGCA------------GGUG-----------AGGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 152608 0.69 0.630925
Target:  5'- cCGGGUUUCGa--GCUCCGGGGcCGGg -3'
miRNA:   3'- -GCCCAGGGCaggUGAGGCUCCaGCCa -5'
9193 5' -61.5 NC_002512.2 + 153272 0.74 0.384213
Target:  5'- gCGGGUCCUGgucggcUgGCUCCGcuGGGUCGGUc -3'
miRNA:   3'- -GCCCAGGGCa-----GgUGAGGC--UCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 153471 0.71 0.50998
Target:  5'- uGGGUCUgcguuaccguCGUCCAgUCCGGGGaCGGc -3'
miRNA:   3'- gCCCAGG----------GCAGGUgAGGCUCCaGCCa -5'
9193 5' -61.5 NC_002512.2 + 154677 0.71 0.50998
Target:  5'- uCGGGcgaCCGUCCGCUCCGAG--CGGc -3'
miRNA:   3'- -GCCCag-GGCAGGUGAGGCUCcaGCCa -5'
9193 5' -61.5 NC_002512.2 + 155058 0.71 0.546454
Target:  5'- aGGGUCuCCGUUCGCgCgCGGGGUCGuGa -3'
miRNA:   3'- gCCCAG-GGCAGGUGaG-GCUCCAGC-Ca -5'
9193 5' -61.5 NC_002512.2 + 155272 0.66 0.819366
Target:  5'- gGcGGUCUCGcgcUCCGCUCCGGuccGcGUCGGc -3'
miRNA:   3'- gC-CCAGGGC---AGGUGAGGCU---C-CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 156710 0.66 0.803172
Target:  5'- gCGGGaCCUGUCCGCagcuggucucgUCCGucGUCuGGUa -3'
miRNA:   3'- -GCCCaGGGCAGGUG-----------AGGCucCAG-CCA- -5'
9193 5' -61.5 NC_002512.2 + 157100 0.66 0.777903
Target:  5'- gCGGG-CCCGUCCcggcgacguccCUCCcggcgucgGGGGUCGGc -3'
miRNA:   3'- -GCCCaGGGCAGGu----------GAGG--------CUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 159386 0.69 0.659305
Target:  5'- gCGGGUCCCG-CgGCgUCGGGG-CGGa -3'
miRNA:   3'- -GCCCAGGGCaGgUGaGGCUCCaGCCa -5'
9193 5' -61.5 NC_002512.2 + 166612 0.7 0.593123
Target:  5'- gGGGUCCCagggcUCCGCgUCCGGGaacGUCGGc -3'
miRNA:   3'- gCCCAGGGc----AGGUG-AGGCUC---CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 179014 0.66 0.827248
Target:  5'- uGGuUCCCGugUCCuuCUCCGAcGUCGGg -3'
miRNA:   3'- gCCcAGGGC--AGGu-GAGGCUcCAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.