miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 5' -61.5 NC_002512.2 + 19672 0.68 0.696851
Target:  5'- uCGGGUCCgCGUCUccguCUCgGAcgaucagacGGUCGGg -3'
miRNA:   3'- -GCCCAGG-GCAGGu---GAGgCU---------CCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 227979 0.66 0.827248
Target:  5'- aGGGcCCCGgcgCCGagggCCGAGGgcCGGa -3'
miRNA:   3'- gCCCaGGGCa--GGUga--GGCUCCa-GCCa -5'
9193 5' -61.5 NC_002512.2 + 94021 0.66 0.819366
Target:  5'- aGGGcCUCGUCCgccaGCUCCucGG-CGGUg -3'
miRNA:   3'- gCCCaGGGCAGG----UGAGGcuCCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 156710 0.66 0.803172
Target:  5'- gCGGGaCCUGUCCGCagcuggucucgUCCGucGUCuGGUa -3'
miRNA:   3'- -GCCCaGGGCAGGUG-----------AGGCucCAG-CCA- -5'
9193 5' -61.5 NC_002512.2 + 102040 0.66 0.794872
Target:  5'- aCGGGaUCCCGcUCCggACUCCGGaG-CGGUu -3'
miRNA:   3'- -GCCC-AGGGC-AGG--UGAGGCUcCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 149141 0.66 0.777903
Target:  5'- cCGGGaCCCGggaCCGC-CgCGGGGcCGGUg -3'
miRNA:   3'- -GCCCaGGGCa--GGUGaG-GCUCCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 157100 0.66 0.777903
Target:  5'- gCGGG-CCCGUCCcggcgacguccCUCCcggcgucgGGGGUCGGc -3'
miRNA:   3'- -GCCCaGGGCAGGu----------GAGG--------CUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 150500 0.67 0.769248
Target:  5'- ---uUCUCGUCCGC-CCGcGGGUCGGg -3'
miRNA:   3'- gcccAGGGCAGGUGaGGC-UCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 5771 0.67 0.733652
Target:  5'- --uGUCCCGUCCGCUCaGAcGGUuCGGc -3'
miRNA:   3'- gccCAGGGCAGGUGAGgCU-CCA-GCCa -5'
9193 5' -61.5 NC_002512.2 + 154677 0.71 0.50998
Target:  5'- uCGGGcgaCCGUCCGCUCCGAG--CGGc -3'
miRNA:   3'- -GCCCag-GGCAGGUGAGGCUCcaGCCa -5'
9193 5' -61.5 NC_002512.2 + 191334 0.71 0.5281
Target:  5'- gCGGGUgCCGUCCGCgaCGGGGguaGGUc -3'
miRNA:   3'- -GCCCAgGGCAGGUGagGCUCCag-CCA- -5'
9193 5' -61.5 NC_002512.2 + 113186 0.71 0.5281
Target:  5'- cCGGcGUCgCCGUCCGCUCCGcgagcGGGagcCGGg -3'
miRNA:   3'- -GCC-CAG-GGCAGGUGAGGC-----UCCa--GCCa -5'
9193 5' -61.5 NC_002512.2 + 113717 0.71 0.536333
Target:  5'- uGGGUCCCGacgcgggcggcgaUCUGCgggCCGAGGUgcgCGGUc -3'
miRNA:   3'- gCCCAGGGC-------------AGGUGa--GGCUCCA---GCCA- -5'
9193 5' -61.5 NC_002512.2 + 155058 0.71 0.546454
Target:  5'- aGGGUCuCCGUUCGCgCgCGGGGUCGuGa -3'
miRNA:   3'- gCCCAG-GGCAGGUGaG-GCUCCAGC-Ca -5'
9193 5' -61.5 NC_002512.2 + 194634 0.7 0.555708
Target:  5'- gCGGGggaccugCCCGUCCucuuCUCCGAucGGgCGGUc -3'
miRNA:   3'- -GCCCa------GGGCAGGu---GAGGCU--CCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 166612 0.7 0.593123
Target:  5'- gGGGUCCCagggcUCCGCgUCCGGGaacGUCGGc -3'
miRNA:   3'- gCCCAGGGc----AGGUG-AGGCUC---CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 200037 0.7 0.602551
Target:  5'- gCGGGUucUCCGgaucCCGCUCCagauagugcaucGGGGUCGGg -3'
miRNA:   3'- -GCCCA--GGGCa---GGUGAGG------------CUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 151547 0.68 0.705212
Target:  5'- gGGGUCCCGUCCcgguCUcgccuucCCGAGaGcCGGc -3'
miRNA:   3'- gCCCAGGGCAGGu---GA-------GGCUC-CaGCCa -5'
9193 5' -61.5 NC_002512.2 + 151963 0.68 0.687517
Target:  5'- cCGGGUCuCCGUgaACggagaccggCCGuGGUCGGUu -3'
miRNA:   3'- -GCCCAG-GGCAggUGa--------GGCuCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 152608 0.69 0.630925
Target:  5'- cCGGGUUUCGa--GCUCCGGGGcCGGg -3'
miRNA:   3'- -GCCCAGGGCaggUGAGGCUCCaGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.