miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9194 3' -54.9 NC_002512.2 + 221593 0.66 0.981627
Target:  5'- -cGACCcggaggggggucgguGGACGGCGAGGaGGGAGcGGGu -3'
miRNA:   3'- cuCUGG---------------UCUGCUGCUCUgCUCUC-CUC- -5'
9194 3' -54.9 NC_002512.2 + 193873 0.66 0.980819
Target:  5'- cGGACgcggCGGugGACGAcGCGGGAGcGGGu -3'
miRNA:   3'- cUCUG----GUCugCUGCUcUGCUCUC-CUC- -5'
9194 3' -54.9 NC_002512.2 + 192830 0.66 0.980819
Target:  5'- cGGGGCCAgGugGACGAGGuu-GAcGGAGc -3'
miRNA:   3'- -CUCUGGU-CugCUGCUCUgcuCU-CCUC- -5'
9194 3' -54.9 NC_002512.2 + 51758 0.66 0.980819
Target:  5'- cGGACgCuGACGACGAuGAgCGAgGAGGAc -3'
miRNA:   3'- cUCUG-GuCUGCUGCU-CU-GCU-CUCCUc -5'
9194 3' -54.9 NC_002512.2 + 179964 0.66 0.980819
Target:  5'- aGGGAuuggUCAGguGCGACGAGAUGuacacAGAGGAa -3'
miRNA:   3'- -CUCU----GGUC--UGCUGCUCUGC-----UCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 17022 0.66 0.980819
Target:  5'- ---uCCGGAgGAgGGGACGcucGGAGGGGa -3'
miRNA:   3'- cucuGGUCUgCUgCUCUGC---UCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 56461 0.66 0.980819
Target:  5'- cGAGACgAGGCGcGCGAuGCGAucGAcGGAGa -3'
miRNA:   3'- -CUCUGgUCUGC-UGCUcUGCU--CU-CCUC- -5'
9194 3' -54.9 NC_002512.2 + 11544 0.66 0.980819
Target:  5'- -cGACCuGGACGA--GGACGAgGAGGAc -3'
miRNA:   3'- cuCUGG-UCUGCUgcUCUGCU-CUCCUc -5'
9194 3' -54.9 NC_002512.2 + 146745 0.66 0.978683
Target:  5'- cGGGCCcGACGACcucGACGAcGGGGAc -3'
miRNA:   3'- cUCUGGuCUGCUGcu-CUGCU-CUCCUc -5'
9194 3' -54.9 NC_002512.2 + 195083 0.66 0.978683
Target:  5'- gGGGACUcgAGGgGuCGAGGcCGAGGGGAu -3'
miRNA:   3'- -CUCUGG--UCUgCuGCUCU-GCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 149550 0.66 0.978683
Target:  5'- aGGGAagaGGGCGAgGAGGacacggaggGAGAGGAGg -3'
miRNA:   3'- -CUCUgg-UCUGCUgCUCUg--------CUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 133716 0.66 0.97846
Target:  5'- --cACCGGACGGuCGGucgcaccgacagcGACGAcGAGGAGa -3'
miRNA:   3'- cucUGGUCUGCU-GCU-------------CUGCU-CUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 111945 0.66 0.97846
Target:  5'- cAGGCCuGAuCGACGuaacgacAGAUGGuGAGGAGg -3'
miRNA:   3'- cUCUGGuCU-GCUGC-------UCUGCU-CUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 129466 0.66 0.977319
Target:  5'- cGAGGCCcucGGACGACacGACGAGGacgccgucgccaacuGGAGc -3'
miRNA:   3'- -CUCUGG---UCUGCUGcuCUGCUCU---------------CCUC- -5'
9194 3' -54.9 NC_002512.2 + 150071 0.66 0.977319
Target:  5'- gGGGACCgccgccgccgccgucGGGCGAUGgagacGGACGAGAcGGAc -3'
miRNA:   3'- -CUCUGG---------------UCUGCUGC-----UCUGCUCU-CCUc -5'
9194 3' -54.9 NC_002512.2 + 101436 0.66 0.976375
Target:  5'- -cGGCCGGcggcGCGGCGAcGcCGAGAGcGGGg -3'
miRNA:   3'- cuCUGGUC----UGCUGCU-CuGCUCUC-CUC- -5'
9194 3' -54.9 NC_002512.2 + 91987 0.66 0.976375
Target:  5'- aGGACCAcGugGAgGAGAuCGAGAGc-- -3'
miRNA:   3'- cUCUGGU-CugCUgCUCU-GCUCUCcuc -5'
9194 3' -54.9 NC_002512.2 + 112576 0.66 0.976375
Target:  5'- aGAGGCggUAGACGGUGAgGGCGuAGAGGAa -3'
miRNA:   3'- -CUCUG--GUCUGCUGCU-CUGC-UCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 226585 0.66 0.976375
Target:  5'- -cGGCCAGGagGGCGcGGCccggGGGAGGAGg -3'
miRNA:   3'- cuCUGGUCUg-CUGCuCUG----CUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 106113 0.66 0.976375
Target:  5'- cGAG-CCAGACGucACGGGA-GAgcccGAGGAGc -3'
miRNA:   3'- -CUCuGGUCUGC--UGCUCUgCU----CUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.