Results 1 - 20 of 276 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9194 | 3' | -54.9 | NC_002512.2 | + | 56461 | 0.66 | 0.980819 |
Target: 5'- cGAGACgAGGCGcGCGAuGCGAucGAcGGAGa -3' miRNA: 3'- -CUCUGgUCUGC-UGCUcUGCU--CU-CCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 101436 | 0.66 | 0.976375 |
Target: 5'- -cGGCCGGcggcGCGGCGAcGcCGAGAGcGGGg -3' miRNA: 3'- cuCUGGUC----UGCUGCU-CuGCUCUC-CUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 91987 | 0.66 | 0.976375 |
Target: 5'- aGGACCAcGugGAgGAGAuCGAGAGc-- -3' miRNA: 3'- cUCUGGU-CugCUgCUCU-GCUCUCcuc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 150217 | 0.66 | 0.975893 |
Target: 5'- gGAGGCCgccggggAGGCGAuCGAgaucgcguucucgGACGAcGAGGGGg -3' miRNA: 3'- -CUCUGG-------UCUGCU-GCU-------------CUGCU-CUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 184710 | 0.66 | 0.974906 |
Target: 5'- cGAGACCuccgaGGACGAcuucuacgcgcgcauCGAcGACGuGAGGAu -3' miRNA: 3'- -CUCUGG-----UCUGCU---------------GCU-CUGCuCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 221396 | 0.66 | 0.97389 |
Target: 5'- cGGGGCgCGGGCGGgGAGGCGGcGGGu- -3' miRNA: 3'- -CUCUG-GUCUGCUgCUCUGCUcUCCuc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 201758 | 0.66 | 0.97389 |
Target: 5'- cGAucCCGGGgGACGggagGGACGAGGGuGAGa -3' miRNA: 3'- -CUcuGGUCUgCUGC----UCUGCUCUC-CUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 229254 | 0.66 | 0.97389 |
Target: 5'- cAGACuCAGAgucgaGACaGAGAaGGGAGGAGg -3' miRNA: 3'- cUCUG-GUCUg----CUG-CUCUgCUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 145774 | 0.66 | 0.97389 |
Target: 5'- cGAGACgCuGugGccGCGGGAgGAGGuGGAGg -3' miRNA: 3'- -CUCUG-GuCugC--UGCUCUgCUCU-CCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 112576 | 0.66 | 0.976375 |
Target: 5'- aGAGGCggUAGACGGUGAgGGCGuAGAGGAa -3' miRNA: 3'- -CUCUG--GUCUGCUGCU-CUGC-UCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 226585 | 0.66 | 0.976375 |
Target: 5'- -cGGCCAGGagGGCGcGGCccggGGGAGGAGg -3' miRNA: 3'- cuCUGGUCUg-CUGCuCUG----CUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 164634 | 0.66 | 0.976375 |
Target: 5'- gGAGuCCGGACGGCaGGcGGCGAucGGGGu -3' miRNA: 3'- -CUCuGGUCUGCUG-CU-CUGCUcuCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 193873 | 0.66 | 0.980819 |
Target: 5'- cGGACgcggCGGugGACGAcGCGGGAGcGGGu -3' miRNA: 3'- cUCUG----GUCugCUGCUcUGCUCUC-CUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 192830 | 0.66 | 0.980819 |
Target: 5'- cGGGGCCAgGugGACGAGGuu-GAcGGAGc -3' miRNA: 3'- -CUCUGGU-CugCUGCUCUgcuCU-CCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 146745 | 0.66 | 0.978683 |
Target: 5'- cGGGCCcGACGACcucGACGAcGGGGAc -3' miRNA: 3'- cUCUGGuCUGCUGcu-CUGCU-CUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 195083 | 0.66 | 0.978683 |
Target: 5'- gGGGACUcgAGGgGuCGAGGcCGAGGGGAu -3' miRNA: 3'- -CUCUGG--UCUgCuGCUCU-GCUCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 149550 | 0.66 | 0.978683 |
Target: 5'- aGGGAagaGGGCGAgGAGGacacggaggGAGAGGAGg -3' miRNA: 3'- -CUCUgg-UCUGCUgCUCUg--------CUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 111945 | 0.66 | 0.97846 |
Target: 5'- cAGGCCuGAuCGACGuaacgacAGAUGGuGAGGAGg -3' miRNA: 3'- cUCUGGuCU-GCUGC-------UCUGCU-CUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 150071 | 0.66 | 0.977319 |
Target: 5'- gGGGACCgccgccgccgccgucGGGCGAUGgagacGGACGAGAcGGAc -3' miRNA: 3'- -CUCUGG---------------UCUGCUGC-----UCUGCUCU-CCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 106113 | 0.66 | 0.976375 |
Target: 5'- cGAG-CCAGACGucACGGGA-GAgcccGAGGAGc -3' miRNA: 3'- -CUCuGGUCUGC--UGCUCUgCU----CUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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