miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9194 3' -54.9 NC_002512.2 + 9974 0.99 0.027517
Target:  5'- gGAGACC-GACGACGAGACGAGAGGAGg -3'
miRNA:   3'- -CUCUGGuCUGCUGCUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 150043 0.91 0.081171
Target:  5'- gGGGGCCggGGACGACGGGGCGGGAGGGGg -3'
miRNA:   3'- -CUCUGG--UCUGCUGCUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 109 0.82 0.292427
Target:  5'- gGAGGCCggcaggAGGCGGCagagGAGGCGAGAGGAGg -3'
miRNA:   3'- -CUCUGG------UCUGCUG----CUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 123181 0.81 0.3343
Target:  5'- cGAGGCCgAGGCggGACGGGACGAgGAGGAGc -3'
miRNA:   3'- -CUCUGG-UCUG--CUGCUCUGCU-CUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 228882 0.81 0.3343
Target:  5'- gGAGGCCGGGCGAguGGAUGAGAGGAc -3'
miRNA:   3'- -CUCUGGUCUGCUgcUCUGCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 229488 0.81 0.341692
Target:  5'- gGAGGCgagAGGCGGCGGGGgGAGAGGAGg -3'
miRNA:   3'- -CUCUGg--UCUGCUGCUCUgCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 11476 0.8 0.380397
Target:  5'- gGAGACCgcgaGGACGACGAcGACGgAGAGGAc -3'
miRNA:   3'- -CUCUGG----UCUGCUGCU-CUGC-UCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 226457 0.79 0.404986
Target:  5'- -cGACCAGcccCG-CGAGGCGGGAGGAGg -3'
miRNA:   3'- cuCUGGUCu--GCuGCUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 53838 0.79 0.404986
Target:  5'- aGAGACCcggGGGCGGCGccgGGAgGAGAGGGGg -3'
miRNA:   3'- -CUCUGG---UCUGCUGC---UCUgCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 122764 0.79 0.404986
Target:  5'- cGGGCCGGAgGACGAgGACGAggacGAGGAGg -3'
miRNA:   3'- cUCUGGUCUgCUGCU-CUGCU----CUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 74672 0.79 0.413402
Target:  5'- gGGGACgGGACGGaGGGACGGGAGGAc -3'
miRNA:   3'- -CUCUGgUCUGCUgCUCUGCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 228944 0.79 0.421925
Target:  5'- aGGGCgAGGCGAgGAGAgGAGAGGGGc -3'
miRNA:   3'- cUCUGgUCUGCUgCUCUgCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 228776 0.79 0.421925
Target:  5'- -cGACCgAGACGGCgGAGACGggAGAGGAGa -3'
miRNA:   3'- cuCUGG-UCUGCUG-CUCUGC--UCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 226244 0.79 0.430553
Target:  5'- gGGGGCCGGAgGAgGAGGagGAGAGGAGa -3'
miRNA:   3'- -CUCUGGUCUgCUgCUCUg-CUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 228525 0.79 0.439284
Target:  5'- aGAGACgGaGGCGACGAGACGAcacGGGAGg -3'
miRNA:   3'- -CUCUGgU-CUGCUGCUCUGCUc--UCCUC- -5'
9194 3' -54.9 NC_002512.2 + 149591 0.78 0.475181
Target:  5'- cGAGACCGccGACGACGAGgacauGCGcGGGGGAGa -3'
miRNA:   3'- -CUCUGGU--CUGCUGCUC-----UGC-UCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 227525 0.78 0.475181
Target:  5'- aGAGuCCGG-CGGCG-GACGGGGGGAGg -3'
miRNA:   3'- -CUCuGGUCuGCUGCuCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 70697 0.77 0.512482
Target:  5'- -cGGCCGGGCGG-GGGACGGGGGGAc -3'
miRNA:   3'- cuCUGGUCUGCUgCUCUGCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 98629 0.77 0.512482
Target:  5'- -uGGCCGuGACGAgCGAGACGgAGGGGAGu -3'
miRNA:   3'- cuCUGGU-CUGCU-GCUCUGC-UCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 90513 0.77 0.521998
Target:  5'- cGAGGCCggcggcGGACGACGGGAacgcgguggGGGAGGAGg -3'
miRNA:   3'- -CUCUGG------UCUGCUGCUCUg--------CUCUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.