miRNA display CGI


Results 21 - 40 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9194 3' -54.9 NC_002512.2 + 164634 0.66 0.976375
Target:  5'- gGAGuCCGGACGGCaGGcGGCGAucGGGGu -3'
miRNA:   3'- -CUCuGGUCUGCUG-CU-CUGCUcuCCUC- -5'
9194 3' -54.9 NC_002512.2 + 226585 0.66 0.976375
Target:  5'- -cGGCCAGGagGGCGcGGCccggGGGAGGAGg -3'
miRNA:   3'- cuCUGGUCUg-CUGCuCUG----CUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 112576 0.66 0.976375
Target:  5'- aGAGGCggUAGACGGUGAgGGCGuAGAGGAa -3'
miRNA:   3'- -CUCUG--GUCUGCUGCU-CUGC-UCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 101436 0.66 0.976375
Target:  5'- -cGGCCGGcggcGCGGCGAcGcCGAGAGcGGGg -3'
miRNA:   3'- cuCUGGUC----UGCUGCU-CuGCUCUC-CUC- -5'
9194 3' -54.9 NC_002512.2 + 91987 0.66 0.976375
Target:  5'- aGGACCAcGugGAgGAGAuCGAGAGc-- -3'
miRNA:   3'- cUCUGGU-CugCUgCUCU-GCUCUCcuc -5'
9194 3' -54.9 NC_002512.2 + 150217 0.66 0.975893
Target:  5'- gGAGGCCgccggggAGGCGAuCGAgaucgcguucucgGACGAcGAGGGGg -3'
miRNA:   3'- -CUCUGG-------UCUGCU-GCU-------------CUGCU-CUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 101618 0.66 0.975649
Target:  5'- -cGGCCcGGCGcCGGGAcgcgagucgccgcuCGAGGGGAGc -3'
miRNA:   3'- cuCUGGuCUGCuGCUCU--------------GCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 184710 0.66 0.974906
Target:  5'- cGAGACCuccgaGGACGAcuucuacgcgcgcauCGAcGACGuGAGGAu -3'
miRNA:   3'- -CUCUGG-----UCUGCU---------------GCU-CUGCuCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 135801 0.66 0.97389
Target:  5'- cGGACCGGccgcCGcCGucGCGGGGGGAGg -3'
miRNA:   3'- cUCUGGUCu---GCuGCucUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 103408 0.66 0.97389
Target:  5'- gGGGAuCCGGGCGACGcGACGAcGAcGGcGa -3'
miRNA:   3'- -CUCU-GGUCUGCUGCuCUGCU-CU-CCuC- -5'
9194 3' -54.9 NC_002512.2 + 40917 0.66 0.97389
Target:  5'- cGGACCuGuaaACGggaACGGGACGGGGGaGAGg -3'
miRNA:   3'- cUCUGGuC---UGC---UGCUCUGCUCUC-CUC- -5'
9194 3' -54.9 NC_002512.2 + 229254 0.66 0.97389
Target:  5'- cAGACuCAGAgucgaGACaGAGAaGGGAGGAGg -3'
miRNA:   3'- cUCUG-GUCUg----CUG-CUCUgCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 226896 0.66 0.97389
Target:  5'- cGGGACCGGGCcacGCGGGAgGccaAGGAGg -3'
miRNA:   3'- -CUCUGGUCUGc--UGCUCUgCuc-UCCUC- -5'
9194 3' -54.9 NC_002512.2 + 145774 0.66 0.97389
Target:  5'- cGAGACgCuGugGccGCGGGAgGAGGuGGAGg -3'
miRNA:   3'- -CUCUG-GuCugC--UGCUCUgCUCU-CCUC- -5'
9194 3' -54.9 NC_002512.2 + 201758 0.66 0.97389
Target:  5'- cGAucCCGGGgGACGggagGGACGAGGGuGAGa -3'
miRNA:   3'- -CUcuGGUCUgCUGC----UCUGCUCUC-CUC- -5'
9194 3' -54.9 NC_002512.2 + 102329 0.66 0.97389
Target:  5'- cGGGCCucccGGACGACGAGcCGGGuccGGGc -3'
miRNA:   3'- cUCUGG----UCUGCUGCUCuGCUCu--CCUc -5'
9194 3' -54.9 NC_002512.2 + 221396 0.66 0.97389
Target:  5'- cGGGGCgCGGGCGGgGAGGCGGcGGGu- -3'
miRNA:   3'- -CUCUG-GUCUGCUgCUCUGCUcUCCuc -5'
9194 3' -54.9 NC_002512.2 + 152803 0.66 0.97389
Target:  5'- gGAGGuCCGcGGCGACGGcgggcGGCGAGcAGGAu -3'
miRNA:   3'- -CUCU-GGU-CUGCUGCU-----CUGCUC-UCCUc -5'
9194 3' -54.9 NC_002512.2 + 39065 0.66 0.973108
Target:  5'- cGAGGCCcaGGACGAgGAagguguacaggucgGACGcGAGGAa -3'
miRNA:   3'- -CUCUGG--UCUGCUgCU--------------CUGCuCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 166471 0.66 0.97122
Target:  5'- cGAGGgCggGGACGGCGGGaccGCGGGucGGAGg -3'
miRNA:   3'- -CUCUgG--UCUGCUGCUC---UGCUCu-CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.